BAC Information

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BAC

Clone NameB6Ng01-050M06
ChromosomeY (Build37)
Map Location 1,531,494 - 1,681,987
singlet/doubletdoublet
Overlap geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401
Upstream geneUty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
Downstream geneLOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050M06.bB6Ng01-050M06.g
ACCDH874612DH874613
length1,0521,019
definitionDH874612|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M06, 5' end.DH874613|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(1,531,494 - 1,532,561)(1,680,965 - 1,681,987)
sequence
gaattcctgttgagacccgggtactgttttgccaagtactaaaagttact
gccaatgggtcattgttctttgaagtgtgattttcttcctttctgtctct
ctttcttataatccaaacatatcatacatctattgccaggttctcacaca
tacaaacttgactgcaaatgtgacttctggtctggaacacgtgggtaacc
tcattgtacaggttaatgcagtcttcacccagaacagtctttactaactg
gtagtatcactaatgtgtactatgacgtttttttggatttttttgtttgt
ttgtttttggtttttgtttgcttttgaccattgctgacatgcatttgttt
gctctgtctgtagtgggctcagatgagtttgaagggctcttcaaacagtc
agctgaaaatattaaccaatacctcacgtaagtaacagacaaaccaacag
tggacagaaggcagtcaacaaagacgtccttgtctgctctcctcaggcac
atcctcggtggatgctttggataattaatggttgattgagccttatgctg
gtggaggttgataggaaatggtcaggattgacatttttgctggagaaaga
aggcttgcccagaaaccttacttctaggcctctgaagtaatccaggtctt
tgtatttgatagagatcccacgttcatggaacagacacagcaggtagctg
gcacccagcctttggaaatactggaggccatacactgtagtctggtcctg
cagaggcacagactagggccaactgtgtgtcttgggcctaccagcactgg
cacacccagtattctcacaacatccagccgtcgctgcacagcttccctcc
agctcagtgttacatacttggtggatgtatttggctgagcacatttccag
aaaattggagacttactgtcttctgtcttctgccaggcagcctactgcca
caagtaccagaatgcaagtgtaggctagtactggtgcagctttgtgtttc
cttctcctgcaccaagaagggttagtttctttcagctgcacttgtgggct
ga
gaattccactgtcccactccataaggaaattgccagaaagggaaactgtg
aggaggagtgaagactgctgggttctctgcacacctgcacttaattcttc
caggttgtatgaaaatgcacttctggtgttgtgtgtggttgaagtgctca
aagactggtctccccagctctcagggcctgtgcctactgtcacactggag
tgcttctttctctggctggatttcaacttctgtccttctaccctttttcc
ctctctccctcagttcctccattccttccttcctgcttcccttacctttc
ctaaagcagtttctcttcttgacctctttgctgaaagactggccattaaa
aagaattctcaggcctggctctctacacccaaactataacctcaactcca
tctcccctgtaacatttcgaggcacctagcctgtgcactggtgactcaga
aataccagtgtgactatctaataggagcctgacagtatcctggcacatgg
atgagaaaaagcctctatgatgtcctcagaagcttctagtttccttgatc
tagatatcaaagtgtcccaatgaagtcccctgggttgggatcacccaaaa
aatgagcatgtgctacatatccatgatgaaatttgagaaacatataaatg
tttacataaaagcacttaaatgtaggaaaagctgaaaacatctacaagtt
ttttagtacagtcatggtttactggtaacactaagcaaagcactacaaag
agttaattgggttgaagtattttaagctcagggagaacagattagtgatt
ttgttgtttttaaaataaggtaactttattatttatttataagataggtg
tagacttttccagatttctgagaacccttaaggaaagattctgtagggaa
gctctgccccatttcttgcagtggccagcagaagaatcctctcccttgtg
atcttagtcaaagactatatgattaatcaaatcacacataatagtactgt
cctcttatctgtcacatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1531494_1532561
seq2: B6Ng01-050M06.b_41_1092

seq1  GAATTCCTGTTGAGACCCGGGTACTGTTTTGCCAAGTACTAAAAGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTGAGACCCGGGTACTGTTTTGCCAAGTACTAAAAGTTACT  50

seq1  GCCAATGGGTCATTGTTCTTTGAAGTGTGATTTTCTTCCTTTCTGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGGGTCATTGTTCTTTGAAGTGTGATTTTCTTCCTTTCTGTCTCT  100

seq1  CTTTCTTATAATCCAAACATATCATACATCTATTGCCAGGTTCTCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATAATCCAAACATATCATACATCTATTGCCAGGTTCTCACACA  150

seq1  TACAAACTTGACTGCAAATGTGACTTCTGGTCTGGAACACGTGGGTAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTTGACTGCAAATGTGACTTCTGGTCTGGAACACGTGGGTAACC  200

seq1  TCATTGTACAGGTTAATGCAGTCTTCACCCAGAACAGTCTTTACTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTACAGGTTAATGCAGTCTTCACCCAGAACAGTCTTTACTAACTG  250

seq1  GTAGTATCACTAATGTGTACTATGACGTTTTTTTGGATTTTTTTGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATCACTAATGTGTACTATGACGTTTTTTTGGATTTTTTTGTTTGT  300

seq1  TTGTTTTTGGTTTTTGTTTGCTTTTGACCATTGCTGACATGCATTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTGGTTTTTGTTTGCTTTTGACCATTGCTGACATGCATTTGTTT  350

seq1  GCTCTGTCTGTAGTGGGCTCAGATGAGTTTGAAGGGCTCTTCAAACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCTGTAGTGGGCTCAGATGAGTTTGAAGGGCTCTTCAAACAGTC  400

seq1  AGCTGAAAATATTAACCAATACCTCACGTAAGTAACAGACAAACCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAAATATTAACCAATACCTCACGTAAGTAACAGACAAACCAACAG  450

seq1  TGGACAGAAGGCAGTCAACAAAGACGTCCTTGTCTGCTCTCCTCAGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAGGCAGTCAACAAAGACGTCCTTGTCTGCTCTCCTCAGGCAC  500

seq1  ATCCTCGGTGGATGCTTTGGATAATTAATGGTTGATTGAGCCTTATGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGGTGGATGCTTTGGATAATTAATGGTTGATTGAGCCTTATGCTG  550

seq1  GTGGAGGTTGATAGGAAATGGTCAGGATTGACATTTTTGCTGGAGAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTTGATAGGAAATGGTCAGGATTGACATTTTTGCTGGAGAAAGA  600

seq1  AGGCTTGCCCAGAAACCTTACTTCTAGGCCTCTGAAGTAATCCAGGTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGCCCAGAAACCTTACTTCTAGGCCTCTGAAGTAATCCAGGTCTT  650

seq1  TGTATTTGATAGAGATCCCACGTTCATGGAACAGACACAGCAGGTAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGATAGAGATCCCACGTTCATGGAACAGACACAGCAGGTAGCTG  700

seq1  GCACCCAGCCTTTGGAAATACTGGAGGCCATACACTGTAGTCTGGTCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGCCTTTGGAAATACTGGAGGCCATACACTGTAGTCTGGTCCTG  750

seq1  CAGAGGCCACAGACTAGGGCCAACTGTGTGTCTTGGGCCTACCAGCACTG  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGG-CACAGACTAGGGCCAACTGTGTGTCTTGGGCCTACCAGCACTG  799

seq1  GCACACCCAGTATTCTCACAACATCCAGCCGTCGCTGCACAGCTTCCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCAGTATTCTCACAACATCCAGCCGTCGCTGCACAGCTTCCCTC  849

seq1  CAGCTCAGGTGTTACATACTTGGTGGATGTATTTGGCTGAGCACATTTCC  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCA-GTGTTACATACTTGGTGGATGTATTTGGCTGAGCACATTTCC  898

seq1  AGAAAATTGGAGACTTACTGTCCTCTGTCCTTCTGCCAGGCAGCCTACCT  950
      |||||||||||||||||||||| ||||| |||||||||||||||||| ||
seq2  AGAAAATTGGAGACTTACTGTCTTCTGT-CTTCTGCCAGGCAGCCTA-CT  946

seq1  GCCACAGGTACCAGAATGCAAGGTGTAGGCTAGTACTTGGTGCAAGCTTT  1000
      |||||| |||||||||||||| |||||||||||||| |||||| ||| ||
seq2  GCCACAAGTACCAGAATGCAA-GTGTAGGCTAGTAC-TGGTGC-AGC-TT  992

seq1  TGTGTTTTCTTCCTCCTGTCAGCCAGGGAAGGGGTTTAGTTTCCTTCCCA  1050
      ||||||| ||| |||||| || | |  ||||||  |||||||| ||  ||
seq2  TGTGTTTCCTT-CTCCTG-CACCAA--GAAGGG--TTAGTTTCTTT--CA  1034

seq1  GCTGCACTTGTGGGCTGA  1068
      ||||||||||||||||||
seq2  GCTGCACTTGTGGGCTGA  1052

seq1: chrY_1680965_1681987
seq2: B6Ng01-050M06.g_67_1085 (reverse)

seq1  TCATGTTGACCAGATAAGAGGACAGTACCTATTAATGTGTGATTTGATTA  50
      ||||| ||| ||||||||||||||||| ||||| ||||||||||||||||
seq2  TCATG-TGA-CAGATAAGAGGACAGTA-CTATT-ATGTGTGATTTGATTA  46

seq1  ATCATGTAGTCTTTGACCTAAGATCACAGGGAGGAGGGATTCTTCCTGCT  100
      ||||| |||||||||| ||||||||||| ||  || |||||||| |||||
seq2  ATCATATAGTCTTTGA-CTAAGATCACAAGGGAGA-GGATTCTT-CTGCT  93

seq1  GGCCACTGC-AGAAATGGGGCAGAGCTTCCCTACAGAATTCTTTCCTTA-  148
      ||||||||| |||||||||||||||||||||||||||| |||||||||| 
seq2  GGCCACTGCAAGAAATGGGGCAGAGCTTCCCTACAGAA-TCTTTCCTTAA  142

seq1  -GGGTCTCAGAAATCTGG-AAAGTCTAACACCTATCTTATAAATATATAA  196
       || |||||||||||||| ||||||| |||||||||||||||||| ||||
seq2  GGGTTCTCAGAAATCTGGAAAAGTCT-ACACCTATCTTATAAATAAATAA  191

seq1  TAAGGT--ACTTATTTTAAAAACAACAAAATCACTAATCTGTTCTCCCTG  244
      ||| ||   |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTACCTTATTTTAAAAACAACAAAATCACTAATCTGTTCTCCCTG  241

seq1  AGCTTTAAAATACTTCACCCCAATT-ACTCTTTGTAGTGCTTTGCTTAGT  293
      ||| ||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AGC-TTAAAATACTTCAACCCAATTAACTCTTTGTAGTGCTTTGCTTAGT  290

seq1  GTTACCAGTAAACCATGACTGTACTAAATAAACTTGTAGATGTTTTCAGC  343
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTACCAGTAAACCATGACTGTACTAAA-AAACTTGTAGATGTTTTCAGC  339

seq1  TTTTCCTACATTTAAGTGCTTTTATGTAAACATTTATATGTTTCTCAAAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTACATTTAAGTGCTTTTATGTAAACATTTATATGTTTCTCAAAT  389

seq1  TTCATCATGGATATGTAGCACATGCTCATTTTTTGGGTGATCCCAACCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATGGATATGTAGCACATGCTCATTTTTTGGGTGATCCCAACCCA  439

seq1  GGGGACTTCATTGGGACACTTTGATATCTAGATCAAGGAAACTAGAAGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTCATTGGGACACTTTGATATCTAGATCAAGGAAACTAGAAGCT  489

seq1  TCTGAGGACATCATAGAGGCTTTTTCTCATCCATGTGCCAGGATACTGTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACATCATAGAGGCTTTTTCTCATCCATGTGCCAGGATACTGTC  539

seq1  AGGCTCCTATTAGATAGTCACACTGGTATTTCTGAGTCACCAGTGCACAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCTATTAGATAGTCACACTGGTATTTCTGAGTCACCAGTGCACAG  589

seq1  GCTAGGTGCCTCGAAATGTTACAGGGGAGATGGAGTTGAGGTTATAGTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTGCCTCGAAATGTTACAGGGGAGATGGAGTTGAGGTTATAGTTT  639

seq1  GGGTGTAGAGAGCCAGGCCTGAGAATTCTTTTTAATGGCCAGTCTTTCAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTAGAGAGCCAGGCCTGAGAATTCTTTTTAATGGCCAGTCTTTCAG  689

seq1  CAAAGAGGTCAAGAAGAGAAACTGCTTTAGGAAAGGTAAGGGAAGCAGGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGTCAAGAAGAGAAACTGCTTTAGGAAAGGTAAGGGAAGCAGGA  739

seq1  AGGAAGGAATGGAGGAACTGAGGGAGAGAGGGAAAAAGGGTAGAAGGACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAATGGAGGAACTGAGGGAGAGAGGGAAAAAGGGTAGAAGGACA  789

seq1  GAAGTTGAAATCCAGCCAGAGAAAGAAGCACTCCAGTGTGACAGTAGGCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGAAATCCAGCCAGAGAAAGAAGCACTCCAGTGTGACAGTAGGCA  839

seq1  CAGGCCCTGAGAGCTGGGGAGACCAGTCTTTGAGCACTTCAACCACACAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCTGAGAGCTGGGGAGACCAGTCTTTGAGCACTTCAACCACACAC  889

seq1  AACACCAGAAGTGCATTTTCATACAACCTGGAAGAATTAAGTGCAGGTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAGAAGTGCATTTTCATACAACCTGGAAGAATTAAGTGCAGGTGT  939

seq1  GCAGAGAACCCAGCAGTCTTCACTCCTCCTCACAGTTTCCCTTTCTGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAACCCAGCAGTCTTCACTCCTCCTCACAGTTTCCCTTTCTGGCA  989

seq1  ATTTCCTTATGGAGTGGGACAGTGGAATTC  1023
      ||||||||||||||||||||||||||||||
seq2  ATTTCCTTATGGAGTGGGACAGTGGAATTC  1019