BAC Information

Click to search

BAC

Clone NameB6Ng01-052K15
ChromosomeY (Build37)1 (Build37)
Map Location 1,870,348 - 1,870,4215,296,181 - 5,297,249
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052K15.bB6Ng01-052K15.g
ACCDH875949DH875950
length7881,069
definitionDH875949|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K15, 5' end.DH875950|Mus musculus domesticus DNA, BAC clone: B6Ng01-052K15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,348 - 1,870,421)(5,296,181 - 5,297,249)
sequence
gaattctagaaagtctttaatttcttctttaacccagtggtcattgagtc
aagacctgttcagttaccgtgagtttgtaggatttctgttgtttatgttg
ttgcactccagctttaatccatgatggtttgataagatacaaggtgttat
ttcattttccctgtatcagttgaggcttgcttttcaaccatctatatgtt
cagttttggagaaggttctatgaagtgctcagaagaagttatactctcac
aagagacagctatatcagggtcctttcagcaaaatcttgctggcatatgc
aatagtggctgcgtttggtggctgatttggtggctgcgtttgatggatcc
acgggtggaaaatacagaagtgaattctcacagtcacctattggatggaa
cacagagcccccaatggagaagtcagagaaagtacccgaagagctgaagg
ggtctgcaaccttataggtggaacaacaatatgaactaaccagtaccctc
ggagctcgtgtctctagctgctatatatcagaagatggcctagtcggcca
tctttgggaagagaggccccttggtcttgcaaactttatatgccccagta
caggggaatgccaggaccaagaagtgggagtgtgtgggtagaggagcagg
gcgagcagatgaagttaagctccttagattggagtttttcattctagcat
ttttatataaggctggatttctggattaatattgtttaatttaggggttg
tttgtttgtttgttttgtttgaatatctttgttttctc
gaattcctttaactttctctgtatctccactattctgactgattaggttc
actttattgttctcaattttccctttggaagggttgtccaaaggagagtg
tcagtgtgcatgaataggctccttagataagcatacggaatcacagcttc
ggcatgacttagtactgaataacataatattgacccaattgatgcctagt
tgcctcatttctcaaatggttttggactatgatagagagaaaaagaactg
ttgtttgccagtctcctatacccagaccctgtctgtgcatggggtaaggt
gtaaagatccaagacaagaggttcagaagccttgtttgtctcccagcata
tgacctcttgcataactagactgctgaactatttttactgaatgagcgtc
tttgtttaaagggtcagtgattgcccatgaaatctatctacccaaatata
ttttattcttccttcttgtgtgtttactttgcctctttcatgtttcttga
ggatttttccaaacagaataatgaacaaagtaatgaattgccaaacagag
tttaggcaatgatcctaaacacaagatctgggagtaagtactagatagct
tgtcaaccctttgacactttatgtaggattagatttttcaaaacttactt
taatgcgggttcttaaatgttgtagtctccctttctagctcatttaccca
ctagaggtagtggaaaggaaaggttaataagggcaaaggaggatgtggac
ctgtttatatatagttctttggaggaaattccagtctttgttgtcaggat
atcagtagttcagatcacagaaatcagcagcagtagtaactttggtccac
tcccaaacatcatttcatgaatcatcatcatcagttagatccagtagtca
gtccaaatctgtggaagcagcaagaagccactggaatatcatgagaagtt
tttagtgtatttatttctacacagtcaccccaattgatggtcagtaagaa
gaaagtggaaccaatgctaagagtggcagcaaaaagaaataatgggcaaa
gcccagtgaaaacagcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870348_1870421
seq2: B6Ng01-052K15.b_462_535

seq1  AGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAAC  50
      ||||||||||||| | ||||| ||||| ||||||||| ||||||||||||
seq2  AGAGAAAGTACCCGAAGAGCTGAAGGGGTCTGCAACCTTATAGGTGGAAC  50

seq1  AACATTATGAACTAACCATTACCC  74
      |||| ||||||||||||| |||||
seq2  AACAATATGAACTAACCAGTACCC  74

seq1: chr1_5296181_5297249
seq2: B6Ng01-052K15.g_68_1136

seq1  GAATTCCTTTAACTTTCTCTGTATCTCCACTATTCTGACTGATTAGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTAACTTTCTCTGTATCTCCACTATTCTGACTGATTAGGTTC  50

seq1  ACTTTATTGTTCTCAATTTTCCCTTTGGAAGGGTTGTCCAAAGGAGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTGTTCTCAATTTTCCCTTTGGAAGGGTTGTCCAAAGGAGAGTG  100

seq1  TCAGTGTGCATGAATAGGCTCCTTAGATAAGCATACGGAATCACAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCATGAATAGGCTCCTTAGATAAGCATACGGAATCACAGCTTC  150

seq1  GGCATGACTTAGTACTGAATAACATAATATTGACCCAATTGATGCCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGACTTAGTACTGAATAACATAATATTGACCCAATTGATGCCTAGT  200

seq1  TGCCTCATTTCTCAAATGGTTTTGGACTATGATAGAGAGAAAAAGAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTTCTCAAATGGTTTTGGACTATGATAGAGAGAAAAAGAACTG  250

seq1  TTGTTTGCCAGTCTCCTATACCCAGACCCTGTCTGTGCATGGGGTAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGCCAGTCTCCTATACCCAGACCCTGTCTGTGCATGGGGTAAGGT  300

seq1  GTAAAGATCCAAGACAAGAGGTTCAGAAGCCTTGTTTGTCTCCCAGCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATCCAAGACAAGAGGTTCAGAAGCCTTGTTTGTCTCCCAGCATA  350

seq1  TGACCTCTTGCATAACTAGACTGCTGAACTATTTTTACTGAATGAGCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCTTGCATAACTAGACTGCTGAACTATTTTTACTGAATGAGCGTC  400

seq1  TTTGTTTAAAGGGTCAGTGATTGCCCATGAAATCTATCTACCCAAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTAAAGGGTCAGTGATTGCCCATGAAATCTATCTACCCAAATATA  450

seq1  TTTTATTCTTCCTTCTTGTGTGTTTACTTTGCCTCTTTCATGTTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTTCCTTCTTGTGTGTTTACTTTGCCTCTTTCATGTTTCTTGA  500

seq1  GGATTTTTCCAAACAGAATAATGAACAAAGTAATGAATTGCCAAACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCCAAACAGAATAATGAACAAAGTAATGAATTGCCAAACAGAG  550

seq1  TTTAGGCAATGATCCTAAACACAAGATCTGGGAGTAAGTACTAGATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCAATGATCCTAAACACAAGATCTGGGAGTAAGTACTAGATAGCT  600

seq1  TGTCAACCCTTTGACACTTTATGTAGGATTAGATTTTTCAAAACTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCCTTTGACACTTTATGTAGGATTAGATTTTTCAAAACTTACTT  650

seq1  TAATGCGGGTTCTTAAATGTTGTAGTCTCCC-TTCTAGCTCA-TTACCCA  698
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  TAATGCGGGTTCTTAAATGTTGTAGTCTCCCTTTCTAGCTCATTTACCCA  700

seq1  CTAGAGGTAGTGGAAAGGAAAGGTTAAT-AGGGCAAAGGAGGATGTGGAC  747
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGAGGTAGTGGAAAGGAAAGGTTAATAAGGGCAAAGGAGGATGTGGAC  750

seq1  CTGTTTATATATAGTTCTTTGGAGGAAATTCCAGTCTTTGTTGTCAGGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATATATAGTTCTTTGGAGGAAATTCCAGTCTTTGTTGTCAGGAT  800

seq1  ATCAGTAGTTCAGATCACAGAAATCAGCAGCAGTAGTAAC-TTGGTCCAC  846
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCAGTAGTTCAGATCACAGAAATCAGCAGCAGTAGTAACTTTGGTCCAC  850

seq1  TCCCAAACATCA-TTCATGAATCATCATCATCAGTTAGATCCAGTAGTCA  895
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACATCATTTCATGAATCATCATCATCAGTTAGATCCAGTAGTCA  900

seq1  GTCCAAATCTGTGGAAGCAGCAAGAAGCCACTGGAATATCATGAGAAGTT  945
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTCCAAATCTGTGGAAGCAGCAAGAAGCCACTGGAATATCATGAGAAG-T  949

seq1  TTTTGGTGTATTTATTTCTACACAGTCACCACAAATGATGGTCAGTAAAG  995
      |||| ||||||||||||||||||||||||| ||| ||||||||||| |||
seq2  TTTTAGTGTATTTATTTCTACACAGTCACCCCAATTGATGGTCAGT-AAG  998

seq1  AAGGAAAGGTGAACCAATGCTACAGAGTTGCCAGCAAAGAGAAAT-ATTG  1044
      || |||||  |||||||||||| |||| || ||||||| |||||| || |
seq2  AA-GAAAGTGGAACCAATGCTA-AGAG-TGGCAGCAAAAAGAAATAATGG  1045

seq1  GCAAAGCCCAGTGAAGACCAGCAAA  1069
      ||||||||||||||| | |||||||
seq2  GCAAAGCCCAGTGAA-AACAGCAAA  1069