BAC Information

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BAC

Clone NameB6Ng01-053B15
Chromosome5 (Build37)Y (Build37)
Map Location 11,416,858 - 11,418,028573,321 - 573,356
singlet/doubletsingletsinglet
Overlap geneLOC667961
Upstream geneLOC100041395, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956
Downstream geneEG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053B15.bB6Ng01-053B15.g
ACCDH876250DH876251
length1,165500
definitionDH876250|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B15, 5' end.DH876251|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,416,858 - 11,418,028)(573,321 - 573,356)
sequence
gaattcttcattcagaatacaagtccttcttttctactggaggaagcaga
agagtccatttctcatctccctcctgaccaagcttcaggttctgcctctc
tgctatgaagcattcatggacatgtgtttgggcatagggacaatctggtg
gtacagcttcataaaacccacctcctataaaggatatgatgaggctgaca
ttgaagaccccagactgacaccacaaggtttggagcagtgcatacctatt
gtaattggaactctctttgaaatcgatcaggtgatctctctgctcatttc
tcagctggatgaggaggtgcagctctgtggtcagcctctctttttccttt
ttgaactccttcttacttaggtcaggtgcagtggatgatgtgtgtcttcg
agcccctttaggtagaagaatacaaaaatactttcatgtgagaattcaaa
gagtgtaggcagaccaccaaaagagagacaatgcctggaaactattgaca
ccagaaagagtttgttctgggcttgagatgcctccacagtgggtctcagt
tctaccagtactctagagagaccaggagatgtaaacagccaggtgtttcc
tctgtctccctaaacatgcttattattaccagagagatgtctccctaaac
aagcttattattaccagagagatgtctccctaaacaagcttattattacc
agagagatgtctccctaaacaagcttattattaccagagagacagcttac
tcaggatgattatcaactgaacagagtgcaatttggcttcagagccatca
gtcccgtggttttcacaagtcagatggtaaaatcacaattctcaagtact
ttagtgcttggagatgctcagatctcctacccagttatgcttaggcccag
gacttgggcttcaaaagtcattcagtgagagaacatggtcaaatactatc
aattgccctactgaaacaccaaacaccaaagaagtagcataggatccctt
ctctgtctggttgtcttcactctgacagtctgtggttacatgtagaaatg
cctgccactcccaactggtgattaagaaaagtaagtggaaactgtccatg
gacaggtagtcaagtcattctgagaacatgagtcatggccttcagcacct
tctccccattatact
gaattcctagccaaatggatggacctggagggcatcatcctgagtgaggt
aacacattcacaaaggaactcacacaatatgtactcactgataagtggat
attagccccaaacctaggattcccaagatataagatacaatttcctaaac
acatgaaactcaagaaaaatgaagactgaagtgtggacacgattcccctc
cttagaagtgggaacaaaacacccttgtaaggagttacagagacaaggtt
tggagctgagatgaaaggatggaccatgtagagactgccatatccaggga
tccaccccataatcagcatccaaacgctgacaccattgcataccctagca
agatttcattgaaaggacccagatatagctatctcttctgagactatgcc
ggggcctagcaaacacagaagtggatgctcacagccagctaatggatgga
tcacagggctcccaatggaggagctagagaaagaacccaaggagctaaag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11416858_11418028
seq2: B6Ng01-053B15.b_42_1206 (reverse)

seq1  AGTATAATGGAGAGAAAGGTGCTGAAGGCCATGACCTCATGTTCTCAGAA  50
      |||||||||| ||| ||||||||||||||||||| |||||||||||||||
seq2  AGTATAATGGGGAG-AAGGTGCTGAAGGCCATGA-CTCATGTTCTCAGAA  48

seq1  TGACTCTGACATCCTGTCCAT-GACAGTTCCCACTTTACCTTTCTTAATC  99
      ||||| ||||  ||||||||| ||||||| |||| |||| ||||||||||
seq2  TGACT-TGACTACCTGTCCATGGACAGTTTCCAC-TTACTTTTCTTAATC  96

seq1  ACCAGTTGTGAGTGGCAGGCATTTCTACATTGTAACCACAGACCTGTCAG  149
      |||||||| |||||||||||||||||||| |||||||||||| |||||||
seq2  ACCAGTTGGGAGTGGCAGGCATTTCTACA-TGTAACCACAGA-CTGTCAG  144

seq1  AGTGGAGACACCCAGACAGAGAAGGGATCCTATTGCTACTTCTTTGGTGT  199
      |||| ||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AGTGAAGACAACCAGACAGAGAAGGGATCCTA-TGCTACTTCTTTGGTGT  193

seq1  TTGGTGTTTCAGTAGGGGCAATTGATAGTATTTTGACCATGTTCTCTCAC  249
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  TTGGTGTTTCAGTA-GGGCAATTGATAGTA-TTTGACCATGTTCTCTCAC  241

seq1  TGAATGACTTTTGAAGCCCAAGTCCTGGGCCT-AGCATAACTGGGTAGGA  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAATGACTTTTGAAGCCCAAGTCCTGGGCCTAAGCATAACTGGGTAGGA  291

seq1  GATCTGAGCATCTCCAAGCACTAAAGTACTTGAGAATTGTGATTTTACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGCATCTCCAAGCACTAAAGTACTTGAGAATTGTGATTTTACCA  341

seq1  TCTGACTTGTG-AAACCACGGGACTGATGGCTCTGAAGCCAAATTGCACT  397
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTGTGAAAACCACGGGACTGATGGCTCTGAAGCCAAATTGCACT  391

seq1  CTGTTCAGTTGATAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGTTGATAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAA  441

seq1  GCTTGTTTAGGGAGACATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTAGGGAGACATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGA  491

seq1  CATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGACATCTCTCTGGTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGACATCTCTCTGGTAAT  541

seq1  AATAAGCATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCC  591

seq1  TGGTCTCTCTAGAGTACTGGTAGAACTGAGACCCACTGTGGAGGCATCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCTAGAGTACTGGTAGAACTGAGACCCACTGTGGAGGCATCTC  641

seq1  AAGCCCAGAACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTC  691

seq1  TCTTTTGGTGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTT  741

seq1  TGTATTCTTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACC  791

seq1  TGACCTAAGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAG  841

seq1  AGCTGCACCTCCTCATCCAGCTGAGAAATGAGCAGAGAGATCACCTGATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACCTCCTCATCCAGCTGAGAAATGAGCAGAGAGATCACCTGATC  891

seq1  GATTTCAAAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCTT  941

seq1  GTGGTGTCAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAG  991

seq1  GAGGTGGGTTTTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAAACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGTTTTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAAACA  1041

seq1  CATGTCCATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCA  1091

seq1  GGAGGGAGATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGG  1141

seq1  ACTTGTATTCTGAATGAAGAATTC  1171
      ||||||||||||||||||||||||
seq2  ACTTGTATTCTGAATGAAGAATTC  1165

seq1: chrY_573321_573356
seq2: B6Ng01-053B15.g_532_567

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36
      ||||||||||||||||||| ||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAG  36