BAC Information

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BAC

Clone NameB6Ng01-053D15
Chromosome5 (Build37)Y (Build37)
Map Location 11,416,811 - 11,418,028573,321 - 573,356
singlet/doubletsingletsinglet
Overlap geneLOC667961
Upstream geneLOC100041395, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956
Downstream geneEG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626, EG668059, Sema3d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053D15.bB6Ng01-053D15.g
ACCDH876338DH876339
length1,209500
definitionDH876338|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D15, 5' end.DH876339|Mus musculus domesticus DNA, BAC clone: B6Ng01-053D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,416,811 - 11,418,028)(573,321 - 573,356)
sequence
gaattcttcattcagaatacaagtccttcttttctactggaggaagcaga
agagtccatttctcatctccctcctgaccaagcttcaggttctgcctctc
tgctatgaagcattcatggacatgtgtttgggcatagggacaatctggtg
gtacagcttcataaaacccacctcctataaaggatatgatgaggctgaca
ttgaagaccccagactgacaccacaaggtttggagcagtgcatacctatt
gtaattggaactctctttgaaatcgatcaggtgatctctctgctcatttc
tcagctggatgaggaggtgcagctctgtggtcagcctctctttttccttt
ttgaactccttcttacttaggtcaggtgcagtggatgatgtgtgtcttcg
agcccctttaggtagaagaatacaaaaatactttcatgtgagaattcaaa
gagtgtaggcagaccaccaaaagagagacaatgcctggaaactattgaca
ccagaaagagtttgttctgggcttgagatgcctccacagtgggtctcagt
tctaccagtactctagagagaccaggagatgtaaacagccaggtgtttcc
tctgtctccctaaacatgcttattattaccagagagatgtctccctaaac
aagcttattattaccagagagatgtctccctaaacaagcttattattacc
agagagatgtctccctaaacaagcttattattaccagagagacagcttac
tcaggatgattatcaactgaacagagtgcaatttggcttcagagccatca
gtcccgtggtttcacaagtcagatggtaaaatcacaattctcaagtactt
tagtgcttggagatgctcagatctcctacccagttatgctaggccaggac
ttgggcttcaaagtcattcagtgagagaacatggtcaaatactatcattg
cccctactgaaacaccaaacaccaaagaagtagcaataggatcccttctc
cttcttgggttctccactctgacaggcctgtgggtaccatgtagaaatgc
ctgccactccacaactgggtgattagaaaggtaaatgggaactgctatga
acggatgtcaaagtcattctgagaactgagggcatgccttcggcactctt
ttctctctccattatgctactcctaatgacctcgtgagtaaaagccctga
gtgaataca
gaattcctagccaaatggatggacctggagggcatcatcctgagtgaggt
aacacattcacaaaggaactcacacaatatgtactcactgataagtggat
attagccccaaacctaggattcccaagatataagatacaatttcctaaac
acatgaaactcaagaaaaatgaagactgaagtgtggacacgattcccctc
cttagaagtgggaacaaaacacccttgtaaggagttacagagacaaggtt
tggagctgagatgaaaggatggaccatgtagagactgccatatccaggga
tccaccccataatcagcatccaaacgctgacaccattgcataccctagca
agatttcattgaaaggacccagatatagctatctcttctgagactatgcc
ggggcctagcaaacacagaagtggatgctcacagccagctaatggatgga
tcacagggctcccaatggaggagctagagaaagaacccaaggagctaaag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11416811_11418028
seq2: B6Ng01-053D15.b_44_1252 (reverse)

seq1  TGTATTTCACTCTCAGGGCTTTTTAACTTCAGTGGCTATTTGGGAGTAGT  50
      ||||||   | ||||||||||||  || |||   | |  || ||||||| 
seq2  TGTATT---CACTCAGGGCTTTT--AC-TCACGAGGTCATTAGGAGTAGC  44

seq1  ATAATGGAGAG---AAAG-GTGCTGAAGGCCATGACCTCATGTTCTCAGA  96
      |||||||||||   |||| |||| ||||| |||| ||||| |||||||||
seq2  ATAATGGAGAGAGAAAAGAGTGCCGAAGG-CATGCCCTCA-GTTCTCAGA  92

seq1  ATGACTCTGACATCCTGTCCATGACAGTTCCCACTTTACCTTTCTTAATC  146
      |||||| |||||||| || |||  ||||||||| |||||||||| |||||
seq2  ATGACTTTGACATCC-GTTCATAGCAGTTCCCA-TTTACCTTTC-TAATC  139

seq1  A-CCAGTTGT-GAGTGGCAGGCATTTCTACATTGTAACCACAGACCTGTC  194
      | |||||||| ||||||||||||||||||||| ||| |||||| ||||||
seq2  ACCCAGTTGTGGAGTGGCAGGCATTTCTACATGGTACCCACAGGCCTGTC  189

seq1  AGAGTGGAGACACCCAGACAGAGAAGGGATCCTATTGCTACTTCTTTGGT  244
      ||||||||||  || |||  ||||||||||||||||||||||||||||||
seq2  AGAGTGGAGAACCCAAGAAGGAGAAGGGATCCTATTGCTACTTCTTTGGT  239

seq1  GTTTGGTGTTTCAGTAGGGGCAATTGATAGTATTTTGACCATGTTCTCTC  294
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  GTTTGGTGTTTCAGTAGGGGCAA-TGATAGTA-TTTGACCATGTTCTCTC  287

seq1  ACTGAATGACTTTTGAAGCCCAAGTCCTGGGCCTAGCATAACTGGGTAGG  344
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  ACTGAATGAC-TTTGAAGCCCAAGTCCT-GGCCTAGCATAACTGGGTAGG  335

seq1  AGATCTGAGCATCTCCAAGCACTAAAGTACTTGAGAATTGTGATTTTACC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTGAGCATCTCCAAGCACTAAAGTACTTGAGAATTGTGATTTTACC  385

seq1  ATCTGACTTGTGAAACCACGGGACTGATGGCTCTGAAGCCAAATTGCACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTTGTGAAACCACGGGACTGATGGCTCTGAAGCCAAATTGCACT  435

seq1  CTGTTCAGTTGATAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGTTGATAATCATCCTGAGTAAGCTGTCTCTCTGGTAATAATAA  485

seq1  GCTTGTTTAGGGAGACATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTTAGGGAGACATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGA  535

seq1  CATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGACATCTCTCTGGTAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTGGTAATAATAAGCTTGTTTAGGGAGACATCTCTCTGGTAAT  585

seq1  AATAAGCATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATGTTTAGGGAGACAGAGGAAACACCTGGCTGTTTACATCTCC  635

seq1  TGGTCTCTCTAGAGTACTGGTAGAACTGAGACCCACTGTGGAGGCATCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTCTAGAGTACTGGTAGAACTGAGACCCACTGTGGAGGCATCTC  685

seq1  AAGCCCAGAACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAACAAACTCTTTCTGGTGTCAATAGTTTCCAGGCATTGTCTC  735

seq1  TCTTTTGGTGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTGGTCTGCCTACACTCTTTGAATTCTCACATGAAAGTATTTT  785

seq1  TGTATTCTTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTTCTACCTAAAGGGGCTCGAAGACACACATCATCCACTGCACC  835

seq1  TGACCTAAGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAGTAAGAAGGAGTTCAAAAAGGAAAAAGAGAGGCTGACCACAG  885

seq1  AGCTGCACCTCCTCATCCAGCTGAGAAATGAGCAGAGAGATCACCTGATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACCTCCTCATCCAGCTGAGAAATGAGCAGAGAGATCACCTGATC  935

seq1  GATTTCAAAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAAAGAGAGTTCCAATTACAATAGGTATGCACTGCTCCAAACCTT  985

seq1  GTGGTGTCAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTCAGTCTGGGGTCTTCAATGTCAGCCTCATCATATCCTTTATAG  1035

seq1  GAGGTGGGTTTTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAAACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGTTTTATGAAGCTGTACCACCAGATTGTCCCTATGCCCAAACA  1085

seq1  CATGTCCATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATGAATGCTTCATAGCAGAGAGGCAGAACCTGAAGCTTGGTCA  1135

seq1  GGAGGGAGATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGG  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGATGAGAAATGGACTCTTCTGCTTCCTCCAGTAGAAAAGAAGG  1185

seq1  ACTTGTATTCTGAATGAAGAATTC  1218
      ||||||||||||||||||||||||
seq2  ACTTGTATTCTGAATGAAGAATTC  1209

seq1: chrY_573321_573356
seq2: B6Ng01-053D15.g_531_566

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  36
      ||||||||||||||||||| ||||||||||||||||
seq2  ATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAG  36