BAC Information

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BAC

Clone NameB6Ng01-055I05
ChromosomeY (Build37)9 (Build37)
Map Location 385,670 - 385,75667,502,407 - 67,503,505
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y
Downstream geneTspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I05.bB6Ng01-055I05.g
ACCDH877938DH877939
length3921,084
definitionDH877938|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I05, 5' end.DH877939|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(385,670 - 385,756)(67,502,407 - 67,503,505)
sequence
actctgtagaccaggctggccttgaactcagaaatttgcctgcctctgtc
tcccgagtgctggaattagaggtatgcgccaccactgcctggcttaaaat
aacattttttaaagaagtgtctcagagctgggaccaaatggggatcaaga
aaggcacttgtgttagatgcaaagtttaagggggcataaaaacaaaacag
caggtgaagtaataaattaatgtttagaaataacgtgcctgtaatatgga
aatggaataggcaaatgacagcctgcaggcccactgtctcctcctcctcc
tcttccacctcctcctcctccacctcctcctcctccttctttgatacagg
attttatgcagactagacaggccttgaactcactacatggtt
gaattcaaataaaggctttcctccccaagttgcttttagccatagggttt
tatcacagcaatagaaatcctaactaagtcaactgctataatgttttaat
acagattttaagcacactgtttaaaggaagggcccagaaagctgcacata
cccaagagaatgggagtgaactcagggaaagcagttagtttaagggccat
tcacaagagagatcttaaacactgggcggggtatgtgttgggcaggtaga
cttagaaaggtccttagaaataagagaagtgggcctgccgggatggctcc
gcagtttagagcacttgctgttcttcctgaggacctgggttcgattctca
gcacccatgtggtgccttacaatcaccagtaatccagatccagggaagct
gtcattgcccgcagaccctttttgcaccaagaatgcaatgtgcatagtac
acagacatagccatgggaaaacacgtatacacagaaaatcaatccctctg
agagaaaatgattgattggtttagagaaagaatgaggcatagccatgtgt
gggtcttgtacttcactgtccttacaactccttctctaggagtttgagaa
attttgaagctatcatcagcatatttctgctgggaaatccaaatgaaatc
tcaaggggagttttaccaggggacacctggatgggtgacagttgataatt
tgcctggtaaggtttctgatttcctttattttgggtgtattagtccatag
taacaaattgccaagttcagctccaccaatagggtgagtcagttactact
tacatcagaattaaaagtaaaagccacgttggccaagtgtgtttgctagc
gtggtttgggttccagcgtgccctttgtgcaaaaagaaatcttcttgctg
aattagttgttttgtttgtgttttcctttgtaactatcagattttttctt
cttgttcttgcagtagataaccaagttatttgtctgttgtcagataatac
atatatcagaagttaatggattaacaataattttaacatcttgtctgctg
tggggcagtactgggggaggggcaatgcaagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_385670_385756
seq2: B6Ng01-055I05.b_52_138

seq1  TCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTG  50
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  TCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATTTGCCTGCCTCTG  50

seq1  CCTCCCGAGTGCTGGGATTAAAGGCTTGCGCCACCAC  87
       |||||||||||||| |||| |||  |||||||||||
seq2  TCTCCCGAGTGCTGGAATTAGAGGTATGCGCCACCAC  87

seq1: chr9_67502407_67503505
seq2: B6Ng01-055I05.g_71_1154

seq1  GAATTCAAATAAAGGCTTTCCTCCCCAAGTTGCTTTTAGCCATAGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAAGGCTTTCCTCCCCAAGTTGCTTTTAGCCATAGGGTTT  50

seq1  TATCACAGCAATAGAAATCCTAACTAAGTCAACTGCTATAATGTTTTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCAATAGAAATCCTAACTAAGTCAACTGCTATAATGTTTTAAT  100

seq1  ACAGATTTTAAGCACACTGTTTAAAGGAAGGGCCCAGAAAGCTGCACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTAAGCACACTGTTTAAAGGAAGGGCCCAGAAAGCTGCACATA  150

seq1  CCCAAGAGAATGGGAGTGAACTCAGGGAAAGCAGTTAGTTTAAGGGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGAATGGGAGTGAACTCAGGGAAAGCAGTTAGTTTAAGGGCCAT  200

seq1  TCACAAGAGAGATCTTAAACACTGGGCGGGGTATGTGTTGGGCAGGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGAGAGATCTTAAACACTGGGCGGGGTATGTGTTGGGCAGGTAGA  250

seq1  CTTAGAAAGGTCCTTAGAAATAAGAGAAGTGGGCCTGCCGGGATGGCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAGGTCCTTAGAAATAAGAGAAGTGGGCCTGCCGGGATGGCTCC  300

seq1  GCAGTTTAGAGCACTTGCTGTTCTTCCTGAGGACCTGGGTTCGATTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTAGAGCACTTGCTGTTCTTCCTGAGGACCTGGGTTCGATTCTCA  350

seq1  GCACCCATGTGGTGCCTTACAATCACCAGTAATCCAGATCCAGGGAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCATGTGGTGCCTTACAATCACCAGTAATCCAGATCCAGGGAAGCT  400

seq1  GTCATTGCCCGCAGACCCTTTTTGCACCAAGAATGCAATGTGCATAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCCCGCAGACCCTTTTTGCACCAAGAATGCAATGTGCATAGTAC  450

seq1  ACAGACATAGCCATGGGAAAACACGTATACACAGAAAATCAATCCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATAGCCATGGGAAAACACGTATACACAGAAAATCAATCCCTCTG  500

seq1  AGAGAAAATGATTGATTGGTTTAGAGAAAGAATGAGGCATAGCCATGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGATTGATTGGTTTAGAGAAAGAATGAGGCATAGCCATGTGT  550

seq1  GGGTCTTGTACTTCACTGTCCTTACAACTCCTTCTCTAGGAGTTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGTACTTCACTGTCCTTACAACTCCTTCTCTAGGAGTTTGAGAA  600

seq1  ATTTTGAAGCTATCATCAGCATATTTCTGCTGGGAAATCCAAATGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGCTATCATCAGCATATTTCTGCTGGGAAATCCAAATGAAATC  650

seq1  TCAAGGGGAGTTTTACCAGGGGACACCTGGATGGGTGACAGTTGATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGGAGTTTTACCAGGGGACACCTGGATGGGTGACAGTTGATAATT  700

seq1  TGCCTGGTAAGGTTTCTGATTTCCTTAATTTTGGGTGTATTAGTCCATAG  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCTGGTAAGGTTTCTGATTTCCTTTATTTTGGGTGTATTAGTCCATAG  750

seq1  TAACAAATTGCCAAGTTCAGCTCCACCAATAGGGTGAGTCAGTTACTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATTGCCAAGTTCAGCTCCACCAATAGGGTGAGTCAGTTACTACT  800

seq1  TACATCAGAATTAAAAGTAAAAGCCACGTTGGCCAAGTGTGTTTGCTAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAGAATTAAAAGTAAAAGCCACGTTGGCCAAGTGTGTTTGCTAGC  850

seq1  GTGGTTTGGGTTCCAGCGTGCCCTTTGTGCAAAAAGAAATCTTCTTGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGGGTTCCAGCGTGCCCTTTGTGCAAAAAGAAATCTTCTTGCTG  900

seq1  AATTAGTTTTGTTTTGTTTGTGTTTTCCTTTGTATACTATCAAGATTTTT  950
      ||||||  |||||||||||||||||||||||||| |||||| ||||||||
seq2  AATTAG--TTGTTTTGTTTGTGTTTTCCTTTGTA-ACTATC-AGATTTTT  946

seq1  TCCTTCTTTGTTTCTTGCAGTTAGATAACCAAGTTATTTGTTCTGTTGTC  1000
      | ||||||   ||||||||| ||||||||||||||||||| |||||||||
seq2  T-CTTCTT--GTTCTTGCAG-TAGATAACCAAGTTATTTG-TCTGTTGTC  991

seq1  AGATAATACATTATATCAG-AGTTAATGGATTAAACAAATAAATATTTAT  1049
      |||||||||| |||||||| ||||||||||||||   |||||   |||| 
seq2  AGATAATACA-TATATCAGAAGTTAATGGATTAA--CAATAA--TTTTAA  1036

seq1  CATCTTTGCCTGCTGTGGGGCAGGTACT-GGGGAGAGGCAATGCAGAGTA  1098
      |||| ||| ||||||||||||| ||||| |||||| ||||||||| ||||
seq2  CATC-TTGTCTGCTGTGGGGCA-GTACTGGGGGAGGGGCAATGCA-AGTA  1083

seq1  G  1099
      |
seq2  G  1084