BAC Information

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BAC

Clone NameB6Ng01-055O21
Chromosome10 (Build37)Y (Build37)
Map Location 92,478,321 - 92,479,4251,870,346 - 1,870,575
singlet/doubletsingletsinglet
Overlap gene4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055O21.bB6Ng01-055O21.g
ACCDH878242DH878243
length1,106488
definitionDH878242|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O21, 5' end.DH878243|Mus musculus domesticus DNA, BAC clone: B6Ng01-055O21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,478,321 - 92,479,425)(1,870,346 - 1,870,575)
sequence
gaattctgcaaatatagaaaaggctcaagctcctgaaatgtatttttcta
ttttcacacttcgttacaggaagcgaatgccttaattgagaaggtcgaag
cagaacaaaatgccctatattcctatcagaagttcttggggagctcaaaa
ataaagaagagcagaattcctcccccacccatcctgctggcccggactca
ctgctctgtgaccctgaagcccgcgccgttcatctcagaggttaaggtac
cgtgccctcccaggtgctgcccccacgccacacgacctaagcgctcccgt
gactatagtaacccttaccactgtcgctctcaggacccaaataatcttac
ttataagcaccaaacaccagatatttagtattttcatgtcttatctatac
ttaatttattcatgatattctccctttatgaattgtcttctaaagctatg
tcaaacacacgggaagagaaaaaacagttccctctgtgtgcctttgtcac
agtgaaactgtgctcaaggtagagagctgaagcagaatcagacactggag
gaggctgtctcctccgagagccagcgttggggacaaagcagcaggacaca
gaatttgaaggttgcaggtctagagattctgtgtatattctccccaggtc
attgtggaaacaagagacaatggagatgtctcttcaactgcaaatctttc
agcatttattagaacgagcctcatctcccatccccaagtcccggactcgg
cctaaatgggaatacctcttgggatttcatttcctaacaagaaatcagct
ccagctagtttatattttaaatatcgctcttttaggccccctttgatgtt
gggccacaattcattcctatctttgattatctttagggcattttgcacac
agagactttgaagtcaagcctatataagtttacaattctagctctgctgc
taacccacagaacactttacaaaggccaaatacagtttcaagcttctcgt
tgtgaagcatgttttttttttttttgtgaaagaagccagtgaagggaggg
cttggagaatgttgttccagttagttcagagttgttcaagcacgatgaag
ttcctg
ttagaattggaaggagttacagagacaaagtttggagctgagacaaaagg
atggtccatctagagactgccatatccagggatccatcccataattagcc
tccaagcgatgacaccattgcatacactagcaagcctttgttgcaaggac
ggtgatatagctgtcccttgtgagactaggccggggcctagcaaacacag
aagtagatgctcacagtcaactattggatggatcacagggcccccaatga
aggagctagagaaagtatccaaggagctaaagagatctgcaaccctatca
gaggaacaacattatgaactaactagtaccccagagctcttgactctagc
tgcatgtgtatcaaaagatgacctagtcggccatcactggaaagagaggc
ccattggtcaggcaaacgttatatgccccagtaaaggggaatgccagggc
caaaaaaaatgggaatcggtgggtaggggagtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92478321_92479425
seq2: B6Ng01-055O21.b_48_1153 (reverse)

seq1  CAGGGACTTCATCGGTGCTGGACAAACTCTCGACTAACTGCA--CACA-T  47
      |||| |||||||| ||||| ||  ||||||  |||||||| |   ||| |
seq2  CAGGAACTTCATC-GTGCTTGAACAACTCTGAACTAACTGGAACAACATT  49

seq1  CTCC-AGCACTCCC-TCACTTGGCTTCTTTTCAC-AAAAAAAAAAAAACA  94
      |||| ||| ||||| |||| ||||||| |||||| |||||||||||||||
seq2  CTCCAAGCCCTCCCTTCAC-TGGCTTC-TTTCACAAAAAAAAAAAAAACA  97

seq1  TGCTTCACAAACGAGAAGCTTGAAACTGTATTTGGCCTTTGTAAAGTTGT  144
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTTCAC-AACGAGAAGCTTGAAACTGTATTTGGCCTTTGTAAAG-TGT  145

seq1  TCTGTGGGTTAGCAGCAGAGCTAGAATTGTAAACTTATATAGGCTTGACT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGTTAGCAGCAGAGCTAGAATTGTAAACTTATATAGGCTTGACT  195

seq1  TCAAAGTCTCTGTGTGCAAAATGCCCTAAAGATAATCAAAGATAGGAATG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCTCTGTGTGCAAAATGCCCTAAAGATAATCAAAGATAGGAATG  245

seq1  AATTGTGGCCCAACATCAAAGGGGGCCTAAAAGAGCGATATTTAAAATAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGCCCAACATCAAAGGGGGCCTAAAAGAGCGATATTTAAAATAT  295

seq1  AAACTAGCTGGAGCTGATTTCTTGTTAGGAAATGAAATCCCAAGAGGTAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGCTGGAGCTGATTTCTTGTTAGGAAATGAAATCCCAAGAGGTAT  345

seq1  TCCCATTTAGGCCGAGTCCGGGACTTGGGGATGGGAGATGAGGCTCGTTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTAGGCCGAGTCCGGGACTTGGGGATGGGAGATGAGGCTCGTTC  395

seq1  TAATAAATGCTGAAAGATTTGCAGTTGAAGAGACATCTCCATTGTCTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGCTGAAAGATTTGCAGTTGAAGAGACATCTCCATTGTCTCTT  445

seq1  GTTTCCACAATGACCTGGGGAGAATATACACAGAATCTCTAGACCTGCAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACAATGACCTGGGGAGAATATACACAGAATCTCTAGACCTGCAA  495

seq1  CCTTCAAATTCTGTGTCCTGCTGCTTTGTCCCCAACGCTGGCTCTCGGAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAATTCTGTGTCCTGCTGCTTTGTCCCCAACGCTGGCTCTCGGAG  545

seq1  GAGACAGCCTCCTCCAGTGTCTGATTCTGCTTCAGCTCTCTACCTTGAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCCTCCTCCAGTGTCTGATTCTGCTTCAGCTCTCTACCTTGAGC  595

seq1  ACAGTTTCACTGTGACAAAGGCACACAGAGGGAACTGTTTTTTCTCTTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCACTGTGACAAAGGCACACAGAGGGAACTGTTTTTTCTCTTCC  645

seq1  CGTGTGTTTGACATAGCTTTAGAAGACAATTCATAAAGGGAGAATATCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTTTGACATAGCTTTAGAAGACAATTCATAAAGGGAGAATATCAT  695

seq1  GAATAAATTAAGTATAGATAAGACATGAAAATACTAAATATCTGGTGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATTAAGTATAGATAAGACATGAAAATACTAAATATCTGGTGTTT  745

seq1  GGTGCTTATAAGTAAGATTATTTGGGTCCTGAGAGCGACAGTGGTAAGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTATAAGTAAGATTATTTGGGTCCTGAGAGCGACAGTGGTAAGGG  795

seq1  TTACTATAGTCACGGGAGCGCTTAGGTCGTGTGGCGTGGGGGCAGCACCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATAGTCACGGGAGCGCTTAGGTCGTGTGGCGTGGGGGCAGCACCT  845

seq1  GGGAGGGCACGGTACCTTAACCTCTGAGATGAACGGCGCGGGCTTCAGGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCACGGTACCTTAACCTCTGAGATGAACGGCGCGGGCTTCAGGG  895

seq1  TCACAGAGCAGTGAGTCCGGGCCAGCAGGATGGGTGGGGGAGGAATTCTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGCAGTGAGTCCGGGCCAGCAGGATGGGTGGGGGAGGAATTCTG  945

seq1  CTCTTCTTTATTTTTGAGCTCCCCAAGAACTTCTGATAGGAATATAGGGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTATTTTTGAGCTCCCCAAGAACTTCTGATAGGAATATAGGGC  995

seq1  ATTTTGTTCTGCTTCGACCTTCTCAATTAAGGCATTCGCTTCCTGTAACG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCTGCTTCGACCTTCTCAATTAAGGCATTCGCTTCCTGTAACG  1045

seq1  AAGTGTGAAAATAGAAAAATACATTTCAGGAGCTTGAGCCTTTTCTATAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGAAAATAGAAAAATACATTTCAGGAGCTTGAGCCTTTTCTATAT  1095

seq1  TTGCAGAATTC  1105
      |||||||||||
seq2  TTGCAGAATTC  1106

seq1: chrY_1870346_1870575
seq2: B6Ng01-055O21.g_329_560

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||| |||||||||||||| |||||||||||||||  | |||
seq2  CTAGAGAAAGTATCCAAGGAGCTAAAGAGATCTGCAACCCTATCAGAGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||| | |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACTAGTACCCCAGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
        ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGTATCAAAAGATGACCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC--AA  198
      || || |||||| ||||||||||||||| ||||||| |||||||||  ||
seq2  GGTCAGGCAAACGTTATATGCCCCAGTAAAGGGGAATGCCAGGGCCAAAA  200

seq1  AAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      |||  || | | ||||||||||||||||||||
seq2  AAAATGGGAATCGGTGGGTAGGGGAGTGGGGG  232