BAC Information

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BAC

Clone NameB6Ng01-056H07
ChromosomeY (Build37)5 (Build37)
Map Location 573,509 - 573,60994,370,047 - 94,371,148
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056H07.bB6Ng01-056H07.g
ACCDH878606DH878607
length1,0281,090
definitionDH878606|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H07, 5' end.DH878607|Mus musculus domesticus DNA, BAC clone: B6Ng01-056H07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,509 - 573,609)(94,370,047 - 94,371,148)
sequence
gaattctcaactgaagaataccaaatgtctgagaagcacctaaaaaaatg
ttcaacatccttagttatcaggaaagtgcaaattaaaacagctctgagat
tctacctcacacaggtcagaatggcttagatcataaactcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagctgttacaactactctgaaaatcagtttggtggttcctcc
caaaattggacataatactacttgaggacctaataatacgactttgggca
tacacccagaagatgtttgaacaagtaattaggacacatgctccactatg
ttcatggcagccttatttatttatttatttacttattattttattttatt
ttttaattaggtatttatttcatttacatttccaatgctatcccaaaagt
ctcccccacgctcccccacccactcctacttcttggccctggcgttcccc
tgtactgaggaagataaagtttgcacgaccaatgggtctctctttccact
gatggccgactaggccatcttctgatgcatatagcagccttatttataat
agccaggtgctggaaagaacattgatgtcccttagcagagtagtggattc
agaaaatgttgtatatttacacaatggatttctactcagctattaaaacc
aacacatttatggaataggcaatttatgatataggcaaatggatgggtct
aggaaatactattctgagtgagataacacaatcacaaaagaacacacatg
gtatgtacttactgataagtggatattaacccagaagcttggaatacgca
aaatataattcacaaaccaccaagaaacaggaagaccaaagtgtggatac
ttcaatccttcttagaagggggacaaaataccgatgaatggagtaacaga
gacaagtgtgagcagaaactgaagaatgcttgtcagagactcccccactg
gggatcaatcccatattatatcacaaat
gaattcagagtaggaattcagtagcattctatctacttatctaataccta
atataaaaaatcaaaaaacttcctcttgatagggagctagagtccctgag
cactttccttttgatgtctcttgacctcatcttatccctgatcaggaaag
gaacaaaaccgttcaaaataattaaataaaaatcaaaataataaaaaaac
ctgaacaatttctatagtatagtctttacgcatatcttgatcagagaaga
gaaagaaacaatgtacagagggagagaaataagaactaaatataacctta
cctatttatgtcttagggaaatgtctgactgaaacaacattctttgtgta
attgacatatactaattatcagttataagtacatactaactaaaggcacc
aaacttcaatccaatgttcagaactttgccttatatcaaaataattgcat
atttcatgactatttagtgtaattataagtggttcatgagaatatatgtt
gctaacatgtttcaggaaaaacttgtttttgttcagtttgtggtgggcaa
agtttaaatgctaacatgtctagctccctgtttctcatttctttttgttt
tcattaattcatttatgtattcactttatcacctgatcacttcctgcctg
tctttttcctcccagttctaccctctgaccttttcatctcatttctttct
gccactgtcctcagcaaaggagaggcacacactccccacccctaccaggt
tccacaccactttgacacaccacgttgcatcaggactaaatgcatcctca
cccactgaagccagacaagtcagcccatcaaggggaaaaggttccaaaag
cagagaacaaagttcaaaggagaaaacacccaatctgatttttggagact
cacatttaagaccaagcttcacatctgttcatatgagtagggctaggttc
agaccatgcagctccttgatcggtaattcatcctgtgtgaacctccaatg
ggtcacatgactagttatgaagtttcttctgggatgctgacctttgttgt
aaagctctgatgaactctactaatggggacctcgagtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573509_573609
seq2: B6Ng01-056H07.b_466_548 (reverse)

seq1  AGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGG  50
      |||||||| ||||||||||||||| |||    |||||| ||| |||    
seq2  AGGGGAACGCCAGGGCCAAGAAGTAGGA----GTGGGTGGGGGAGC----  42

seq1  CAGGGGGAGGATATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGA  100
        | |||        || |||||||||||||||||| |||||||||||||
seq2  --GTGGG--------GGAGACTTTTGGGATAGCATTGGAAATGTAAATGA  82

seq1  A  101
      |
seq2  A  83

seq1: chr5_94370047_94371148
seq2: B6Ng01-056H07.g_71_1160

seq1  GAATTCAGAGCAGGAATTCAGTAGCATTCTATCTACTTATCTAATACCTA  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTAGGAATTCAGTAGCATTCTATCTACTTATCTAATACCTA  50

seq1  ATATAAAAAATCAAAAAACTTCCTCTTGATAGGGAGCTAGAGTCCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAATCAAAAAACTTCCTCTTGATAGGGAGCTAGAGTCCCTGAG  100

seq1  CACTTTCCTTTTGATGTCTCTTGACCTCATCTTATCCCTGATCAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCCTTTTGATGTCTCTTGACCTCATCTTATCCCTGATCAGGAAAG  150

seq1  GAACAAAACCGTTCAAAATAATTAAATAAAAATCAAAATAATAAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAACCGTTCAAAATAATTAAATAAAAATCAAAATAATAAAAAAAC  200

seq1  CTGAACAATTTCTATAGTATAGTCTTTACGCATATCTTGATCAGAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAATTTCTATAGTATAGTCTTTACGCATATCTTGATCAGAGAAGA  250

seq1  GAAAGAAACAATGTACAGAGGGAGAGAAATAAGAACTAAATATAACCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACAATGTACAGAGGGAGAGAAATAAGAACTAAATATAACCTTA  300

seq1  CCTATTTATGTCTTAGGGAAATGTCTGACTGAAACAACATTCTTTGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATGTCTTAGGGAAATGTCTGACTGAAACAACATTCTTTGTGTA  350

seq1  ATTGACATATACTAATTATCAGTTATAAGTACATACTAACTAAAGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATATACTAATTATCAGTTATAAGTACATACTAACTAAAGGCACC  400

seq1  AAACTTCAATCCAATGTTCAGAACTTTGCCTTATATCAAAATAATTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAATCCAATGTTCAGAACTTTGCCTTATATCAAAATAATTGCAT  450

seq1  ATTTCATGACTATTTAGTGTAATTATAAGTGGTTCATGAGAATATATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGACTATTTAGTGTAATTATAAGTGGTTCATGAGAATATATGTT  500

seq1  GCTAACATGTTTCAGGAAAAACTTGTTTTTGTTCAGTTTGTGGTGGGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACATGTTTCAGGAAAAACTTGTTTTTGTTCAGTTTGTGGTGGGCAA  550

seq1  AGTTTAAATGCTAACATGTCTAGCTCCCTGTTTCTCATTTCTTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAATGCTAACATGTCTAGCTCCCTGTTTCTCATTTCTTTTTGTTT  600

seq1  TCATTAATTCATTTATGTATTCACTTTATCACCTGATCACTTCCTGCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATTCATTTATGTATTCACTTTATCACCTGATCACTTCCTGCCTG  650

seq1  TC-TTTTCCTCCCAGTTCTACCCTCTGACCTTTTCATCTCATTTCTTTCT  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCTCCCAGTTCTACCCTCTGACCTTTTCATCTCATTTCTTTCT  700

seq1  GCCACTGTCCTCAGCAAAGGAGAGGCACACACTCCCCACCCCTACCAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTCCTCAGCAAAGGAGAGGCACACACTCCCCACCCCTACCAGGT  750

seq1  TCCACACCACTTTGACACACCACGTTGCATCAGGACTAAATGCATCCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCACTTTGACACACCACGTTGCATCAGGACTAAATGCATCCTCA  800

seq1  CCCACTGAAGCCAGACAAGTCAGCCCATCAAGGGGAAAAGGTTCCAAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAAGCCAGACAAGTCAGCCCATCAAGGGGAAAAGGTTCCAAAAG  850

seq1  CAGAGAACAAAGTTCAAAAGGAGAAAACACCCAATCTGATTTTTAGGAGA  899
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  CAGAGAACAAAGTTC-AAAGGAGAAAACACCCAATCTGATTTTT-GGAGA  898

seq1  CCCACATTTAAGACCAAGCTTCACATCTGTTCCATATGAGTAGGAGGCCT  949
      | ||||||||||||||||||||||||||||| |||||||||   ||| ||
seq2  CTCACATTTAAGACCAAGCTTCACATCTGTT-CATATGAGT---AGGGCT  944

seq1  AGGTCCAGACCATGCATGCTCCTTGATCGGTAGTTCAGTCTGTGTGAACT  999
      |||| ||||||||||| ||||||||||||||| ||||  |||||||||| 
seq2  AGGTTCAGACCATGCA-GCTCCTTGATCGGTAATTCATCCTGTGTGAACC  993

seq1  CCCAATGGGTCCACATGACTTAGTTATGTAGGTCTCCTTCTGGAATGCTT  1049
       ||||||||| |||||||| |||||||| ||   | ||||||| ||||| 
seq2  TCCAATGGGT-CACATGAC-TAGTTATGAAG--TTTCTTCTGGGATGCTG  1039

seq1  GACTCTGTTGTAAAGCTCTGATGACCCTTAGCTAATGGGGACCCTCGAGT  1099
        || ||||||||||||||||||| |  || |||||||||| ||||||||
seq2  ACCTTTGTTGTAAAGCTCTGATGAACTCTA-CTAATGGGGA-CCTCGAGT  1087

seq1  GAA  1102
      |||
seq2  GAA  1090