BAC Information

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BAC

Clone NameB6Ng01-058E19
ChromosomeY (Build37)X (Build37)
Map Location 248,287 - 248,45671,237,736 - 71,237,931
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E19.bB6Ng01-058E19.g
ACCDH879915DH879916
length827196
definitionDH879915|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E19, 5' end.DH879916|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,287 - 248,456)(71,237,736 - 71,237,931)
sequence
gaattctttgtttagctctgtaccccatttttaatagggttatttgtttc
tttggagtctaacttcttgagttatttgtatatattagatattggatatt
agccctctatcagatgtaggattggtaaagatcttttcccagtctgttgg
ttgccattttgtcctgttgacagtgtcctttgccttacagaagctttgca
attttatgagacatttgtcaattctttttttgtttgtttggttggttttt
tgtttgtttgtttgtttcgagacagggtttctctgtgtagccctggctgt
cctggaactaactctgtagaccaggctggcctcgaactcagaaatttgcc
tgcctctgcctcccaagtgctgagattaaaggcgtgtgccaccatgcccg
gctcccatttgtcaactcttgatcttagagaataagctattggtgttctg
ttcaggaaaatttctcctgtgcccatgtgctcaaagctcctccctacttt
cttttctattagtttcagtgtatctggttttatgtggaggtccttgatcc
acttggacttgagctttgtacaaggagataagaatgaaccaattttgtat
tcttctacatgctaaccaccagttgaaccagaaccacttgttgaaaatac
tgtcttttttccactcgatggttttagctcctttgtcaaagatcaagtga
ccatagctgtgcgaattcatttctgggtcttcaattctattccattgacc
tacctgcctgtcattgtaccaataccatgcagtttttatctctattgctc
tgtagtacagcttgaggtcagggatgg
aaatcccagcagccacatggtggcttacaaccacctgtaatgagaaacca
aaagaaaaaagaaaaagaagccagggatatggatggaatggggcgcctct
gcgggcacgtgctgaagcatctccttcccctgagggaccagccacatata
gaatagagttcatttagggcatagggaggggagttgagggggtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248287_248456
seq2: B6Ng01-058E19.b_274_444

seq1  TTTGTTTGTTTGTTTG--TTTGTGCTTGTTTGTTTGTTTCGAGATAGGGT  48
      |||||||||||| |||  ||| || ||||||||||||||||||| |||||
seq2  TTTGTTTGTTTGGTTGGTTTTTTGTTTGTTTGTTTGTTTCGAGACAGGGT  50

seq1  TTCTCTGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  98
      ||||||||||| ||||||||||||||||||| ||| ||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTAACTCTGTAGACCAGGCTG  100

seq1  GCCTCGAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTA  148
      |||||||||||||||||   ||||||||||| |||||||||||| |||||
seq2  GCCTCGAACTCAGAAATTTGCCTGCCTCTGCCTCCCAAGTGCTGAGATTA  150

seq1  AAGGAGTGCGCCACCACTGCCC  170
      |||| ||| ||||||| |||||
seq2  AAGGCGTGTGCCACCA-TGCCC  171

seq1: chrX_71237736_71237931
seq2: B6Ng01-058E19.g_73_268 (reverse)

seq1  ACTACCCCCTCAACTCCCCTCCCTATGCCCTAAATGAACTCTATTCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCCCCTCAACTCCCCTCCCTATGCCCTAAATGAACTCTATTCTATA  50

seq1  TGTGGCTGGTCCCTCAGGGGAAGGAGATGCTTCAGCACGTGCCCGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTGGTCCCTCAGGGGAAGGAGATGCTTCAGCACGTGCCCGCAGAG  100

seq1  GCGCCCCATTCCATCCATATCCCTGGCTTCTTTTTCTTTTTTCTTTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCATTCCATCCATATCCCTGGCTTCTTTTTCTTTTTTCTTTTGGT  150

seq1  TTCTCATTACAGGTGGTTGTAAGCCACCATGTGGCTGCTGGGATTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTACAGGTGGTTGTAAGCCACCATGTGGCTGCTGGGATTT  196