BAC Information

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BAC

Clone NameB6Ng01-059L09
ChromosomeY (Build37)13 (Build37)
Map Location 573,406 - 573,63587,868,764 - 87,869,838
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L09.bB6Ng01-059L09.g
ACCDH880907DH880908
length8781,065
definitionDH880907|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L09, 5' end.DH880908|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,406 - 573,635)(87,868,764 - 87,869,838)
sequence
gaattcctgatatttccaagactttaatcataaaagggtgttggattttg
tcaaatgatttcacagcatctaatgagatgatcatttttttttgtttgtt
tatatactggattgcataatggatttatgtatattgaagcatccctgcat
ccttgggatgaagcctacttgatcatgatggatgatcctcttaatgagtt
cttggattcagttcatgagaactttattgagtatttttgaatggctattt
tttaaattttttattagatattttcttcatttacatttcaaatgctttcc
caaaagtcccctataccctccccctgcactgatcccctacccactcactc
ccacctcttggccctggtgttcccctgtactggggcatagaaagtttgca
agaccaaggggtcattcttcccaatgatggccgagtaggctatcttttgc
tatatatgcagctagagacatgagctctgggggtactgattagttcatat
tgttgttcctcctatagggttgcagatctcttgagctcttaggtactttc
tctaactcttacattgggggccccgtgttccattctatagatgactgtga
gcatccacttctgtatttaccaggcactggcaaagcctcacatgaatttg
cctgacgttctctttctttgttgggtttttgtatggtttaggtgtcagag
taattgtggcctcatagaatgaattaggaagactaccttctgtttccatt
ttctggaatagtttgagaagtattggtattaggtcttctttgaaggtttg
atagaactctgcacaaaacccatcaagtcttccgccatttttggttgaga
gtatattaatgacagtttctatttcttt
gaattcactatattgagtggtatagctatgagaattatttcacagaagtt
attaaatacttctgataaagagataatataacaggcaagtttgtaaaatt
tataagataaaagtgtatgataaattaatcaagtcaaggcttataatata
atatataacatacagatatggtgttctacatgttcatagtataattaatt
ttatatttaacatatagtaaatactttcacagcattagatttttctatat
ataacagtgcttaattgtatatagcattatttgaaagatgacagataagt
gaaatccaaaacgcacagagaaatttgtctaaacaatagacaaagtctca
tcaataatttttcttcatgtttaacaaacttggtctatgaaatacaaaaa
gcagaaacagtatcaggctaatatatggttttcttattttgtatctcatt
aaaacataatacatacttataacaaatactgaagtgtctcagaaaattat
tttgaggtaattataatttttggacatacaacttaacttttcagtaattg
aacatctctgtgtctttcccagctaccatgtactccagatctctgtctaa
tacatgcttatttcttatagtaatttcttataacactcagttttcttgga
cagaatataagattcttataaaatctgaaagtacttttgtgtgtgtgtgt
tgtgtgtttaacaagttactcaaataacaagagtcctataaatcactaca
aatttcagtttgtgatcctccaaccttatgttaaatgcactgtaaatcaa
acacttggatttctgtatattatattgatattataaaattatttgatgtt
tgttctatgtcttatttgctctagtatataaaccacattgctttttctat
ttgtttcatgcccttgacattgtttcatataatactgctgctatttggat
ttggaacagatagattatcattatcattatagtgagtagaaatgattcta
tactgtgagttcctgaaacagcacatttacttatatcaaaattgtaggta
atttatttcatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573406_573635
seq2: B6Ng01-059L09.b_298_527 (reverse)

seq1  CAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGC  50
      |||||||||||||||||||||||||| || || ||||| ||||| | |||
seq2  CAGAGCTCATGTCTCTAGCTGCATATATAGCAAAAGATAGCCTACTCGGC  50

seq1  CATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAG  100
      ||||||||||||||  | ||||||||||||||||||||| ||||||||||
seq2  CATCATTGGGAAGAATGACCCCTTGGTCTTGCAAACTTTCTATGCCCCAG  100

seq1  TACAGGGGAACACCAGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCA  150
      |||||||||||||||||||||||| |||||||   |||||||||| | ||
seq2  TACAGGGGAACACCAGGGCCAAGAGGTGGGAGTGAGTGGGTAGGGGATCA  150

seq1  AGGCAGGGGGAGGATATAGGGGACTTTTGGGATAGCATTTGAAATGTAAA  200
        ||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  GTGCAGGGGGAGGGTATAGGGGACTTTTGGGAAAGCATTTGAAATGTAAA  200

seq1  TGAAGAAAATAACTAATAAAAAATTTAAAA  230
      ||||||||||| ||||||||||||||||||
seq2  TGAAGAAAATATCTAATAAAAAATTTAAAA  230

seq1: chr13_87868764_87869838
seq2: B6Ng01-059L09.g_65_1129 (reverse)

seq1  TTACATGAAATAATATTACCCTACAATATTTGATATAGTTAAATGGTGCT  50
      ||||||||||||| |||| |||||||| |||||||||  ||||| |||||
seq2  TTACATGAAATAA-ATTA-CCTACAAT-TTTGATATAAGTAAAT-GTGCT  46

seq1  GTTTCAGGAACTTCACAGTATAGAATCATTTTCTACTCACTATAATTGAT  100
      ||||||||||| |||||||||||||||| |||||||||||||||| ||||
seq2  GTTTCAGGAAC-TCACAGTATAGAATCA-TTTCTACTCACTATAA-TGAT  93

seq1  AATGATTAATCTATCTGTTCCAAATTCCAAATAGCAGCAGTATTATAATG  150
      ||||| |||||||||||||||||| ||||||||||||||||||||| |||
seq2  AATGA-TAATCTATCTGTTCCAAA-TCCAAATAGCAGCAGTATTAT-ATG  140

seq1  AAACAATGTCAAGGGCATGAAACAAATAGAAAAAGCAATGTGGTTTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGTCAAGGGCATGAAACAAATAGAAAAAGCAATGTGGTTTATAT  190

seq1  ACTAGAGCAAATAAGACATAGAACAAACATCAAATAATTTTATAATATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGCAAATAAGACATAGAACAAACATCAAATAATTTTATAATATCA  240

seq1  ATATAATATACAGAAATCCAAGTGTTTGATTTACAGTGCATTTAACATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATATACAGAAATCCAAGTGTTTGATTTACAGTGCATTTAACATAA  290

seq1  GGTTGGAGGATCACAAACTGAAATTTGTAGTGATTTATAGGACTCTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAGGATCACAAACTGAAATTTGTAGTGATTTATAGGACTCTTGTT  340

seq1  ATTTGAGTAACTTGTTAAACACACAACACACACACACAAAAGTACTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGTAACTTGTTAAACACACAACACACACACACAAAAGTACTTTCA  390

seq1  GATTTTATAAGAATCTTATATTCTGTCCAAGAAAACTGAGTGTTATAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATAAGAATCTTATATTCTGTCCAAGAAAACTGAGTGTTATAAGA  440

seq1  AATTACTATAAGAAATAAGCATGTATTAGACAGAGATCTGGAGTACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATAAGAAATAAGCATGTATTAGACAGAGATCTGGAGTACATGG  490

seq1  TAGCTGGGAAAGACACAGAGATGTTCAATTACTGAAAAGTTAAGTTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGAAAGACACAGAGATGTTCAATTACTGAAAAGTTAAGTTGTAT  540

seq1  GTCCAAAAATTATAATTACCTCAAAATAATTTTCTGAGACACTTCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAAATTATAATTACCTCAAAATAATTTTCTGAGACACTTCAGTAT  590

seq1  TTGTTATAAGTATGTATTATGTTTTAATGAGATACAAAATAAGAAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAAGTATGTATTATGTTTTAATGAGATACAAAATAAGAAAACCA  640

seq1  TATATTAGCCTGATACTGTTTCTGCTTTTTGTATTTCATAGACCAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGCCTGATACTGTTTCTGCTTTTTGTATTTCATAGACCAAGTTT  690

seq1  GTTAAACATGAAGAAAAATTATTGATGAGACTTTGTCTATTGTTTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACATGAAGAAAAATTATTGATGAGACTTTGTCTATTGTTTAGACA  740

seq1  AATTTCTCTGTGCGTTTTGGATTTCACTTATCTGTCATCTTTCAAATAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCTGTGCGTTTTGGATTTCACTTATCTGTCATCTTTCAAATAAT  790

seq1  GCTATATACAATTAAGCACTGTTATATATAGAAAAATCTAATGCTGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATACAATTAAGCACTGTTATATATAGAAAAATCTAATGCTGTGAA  840

seq1  AGTATTTACTATATGTTAAATATAAAATTAATTATACTATGAACATGTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTACTATATGTTAAATATAAAATTAATTATACTATGAACATGTAG  890

seq1  AACACCATATCTGTATGTTATATATTATATTATAAGCCTTGACTTGATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATATCTGTATGTTATATATTATATTATAAGCCTTGACTTGATTA  940

seq1  ATTTATCATACACTTTTATCTTATAAATTTTACAAACTTGCCTGTTATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATACACTTTTATCTTATAAATTTTACAAACTTGCCTGTTATAT  990

seq1  TATCTCTTTATCAGAAGTATTTAATAACTTCTGTGAAATAATTCTCATAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTTATCAGAAGTATTTAATAACTTCTGTGAAATAATTCTCATAG  1040

seq1  CTATACCACTCAATATAGTGAATTC  1075
      |||||||||||||||||||||||||
seq2  CTATACCACTCAATATAGTGAATTC  1065