BAC Information

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BAC

Clone NameB6Ng01-062A12
Chromosome13 (Build37)Y (Build37)
Map Location 23,101,623 - 23,102,6731,870,347 - 1,870,577
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18
Downstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A12.bB6Ng01-062A12.g
ACCDH882548DH882549
length1,044462
definitionDH882548|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A12, 5' end.DH882549|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(23,101,623 - 23,102,673)(1,870,347 - 1,870,577)
sequence
gaattctaaacttactttgctaagcttgctctgaaattcctaactctatg
tagtagatagtaatgcctgatttcttttgctatctctcttacaatactgg
aggcaattctgaatgttactgaacaggtaacattcttactgaattccaag
cccagggtcggctcaaggactgcctaggacattggtgaaggctaggaaga
aagttcaattttgcttaggtatttgacaaatcattgcttggaggcaccta
taataaaacaatactgaaagaaagcacacagatccattcactgactaatg
cagggacaagtctggagcattcgtgctacaggatgccaaagctccaggag
actaagtttccatgaaactttttgcctcaggactatgtccaagcttttgg
gcctgccatgaagtttttactggagtaggtgtggcagtgttgaacacatg
taatgttgcagatgaggttcctgaaactccctctttttctgtggactctg
ttattgtgtgatatcagatagatgtttggcaactggtattcaaatctaaa
gttttaaatgagatttttatttttagcaaaattggcttgttcaagtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtcggtctgtctgtctgtct
gtctgtctgtctgaatccttgttacctctcatcattgttaaatggaactc
caagtttccccagccacgatgtcttcctctttctcattctatgttatcat
atttatccacccaattttccaaagcctgaggctcatactgaatctgtctg
ccttccctatatcacacaaagaccctgggaaactctgctgaacaatactg
cagcatgtctcagatttagtaactttaccttccatgtgtatcctcctttg
ttctcaatattccttcctaatttcatcttgatagcattaaatgcatagat
ttgcattatctcatagtttatatcctcactttctataccttaacctttaa
aagttcttatatgactcttctgtgattcattctacccaaatatt
tttgttcagttctgagccccataggatggaacatgtagagactgccatat
ccagggatccaccccataatcagcatccaaatgctgacaccattgcatac
actagcaagattttattgaaaggacccagatgtagctgtctcttgtgaga
ctatgccggggcctagcaaacacagaagtggatgctcacagtcagctaat
ggatggatcacagggctcccaatggaggagttagagaaagtagccaagga
gctaaagggatctgcaaccctataggtggaacaacattatgaactaacca
gtaccctggagctcttgactctagctgcatatatatcaaaagatggccta
gtcggccatcactggaaagagaggcccgttggacttgcaaactttatatg
ccccagtacaggggaacgccagggccaaaaagggggagtgggtgggcagg
ggagtgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_23101623_23102673
seq2: B6Ng01-062A12.b_44_1087 (reverse)

seq1  AATATTTGTGTAGAATGAAATCACAGAAGAGTCAATATAAGAACTTTTAA  50
      |||||||| |||||||| ||||||||||||||| |||||||||||||| |
seq2  AATATTTGGGTAGAATG-AATCACAGAAGAGTC-ATATAAGAACTTTT-A  47

seq1  AAGGTTAAGGTATAGAAAGTGAAGATATAAAACTATGAGATAAATGCAAA  100
      |||||||||||||||||||||| ||||| |||||||||||| ||||||||
seq2  AAGGTTAAGGTATAGAAAGTGAGGATAT-AAACTATGAGAT-AATGCAAA  95

seq1  TCTATGCATTTAATGCTAATCAAGATGAAATTAAGGAAGGAATATTGAAG  150
      ||||||||||||||||| |||||||||||||| |||||||||||||| ||
seq2  TCTATGCATTTAATGCT-ATCAAGATGAAATT-AGGAAGGAATATTG-AG  142

seq1  AACAAAGGAGGATACACATGGAAGGTAAAGTTACTAAATCTGAGACATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGGAGGATACACATGGAAGGTAAAGTTACTAAATCTGAGACATGC  192

seq1  TGCAGTATTGTTCAGCAGAGTTTCCCAGGGTCTTTGTGTGATATAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATTGTTCAGCAGAGTTTCCCAGGGTCTTTGTGTGATATAGGGAA  242

seq1  GGCAGACAGATTCAGTATGAGCCTCAGGCTTTGG-AAATTGGGTGGATAA  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCAGACAGATTCAGTATGAGCCTCAGGCTTTGGAAAATTGGGTGGATAA  292

seq1  ATATGATAACATAGAATGAGAAAGAGGAAGACATCGTGGCTGGGGAAACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATAACATAGAATGAGAAAGAGGAAGACATCGTGGCTGGGGAAACT  342

seq1  TGGAGTTCCATTTAACAATGATGAGAGGTAACAAGGATTCAGACAGACAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCCATTTAACAATGATGAGAGGTAACAAGGATTCAGACAGACAG  392

seq1  ACAGACAGACAGACAGACCGACAGACACACACACACACACACACACACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACCGACAGACACACACACACACACACACACACAC  442

seq1  ACACACACTTGAACAAGCCAATTTTGCTAAAAATAAAAATCTCATTTAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACTTGAACAAGCCAATTTTGCTAAAAATAAAAATCTCATTTAAA  492

seq1  ACTTTAGATTTGAATACCAGTTGCCAAACATCTATCTGATATCACACAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATTTGAATACCAGTTGCCAAACATCTATCTGATATCACACAAT  542

seq1  AACAGAGTCCACAGAAAAAGAGGGAGTTTCAGGAACCTCATCTGCAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGTCCACAGAAAAAGAGGGAGTTTCAGGAACCTCATCTGCAACAT  592

seq1  TACATGTGTTCAACACTGCCACACCTACTCCAGTAAAAACTTCATGGCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTGTTCAACACTGCCACACCTACTCCAGTAAAAACTTCATGGCAG  642

seq1  GCCCAAAAGCTTGGACATAGTCCTGAGGCAAAAAGTTTCATGGAAACTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAAGCTTGGACATAGTCCTGAGGCAAAAAGTTTCATGGAAACTTA  692

seq1  GTCTCCTGGAGCTTTGGCATCCTGTAGCACGAATGCTCCAGACTTGTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTGGAGCTTTGGCATCCTGTAGCACGAATGCTCCAGACTTGTCCC  742

seq1  TGCATTAGTCAGTGAATGGATCTGTGTGCTTTCTTTCAGTATTGTTTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTAGTCAGTGAATGGATCTGTGTGCTTTCTTTCAGTATTGTTTTAT  792

seq1  TATAGGTGCCTCCAAGCAATGATTTGTCAAATACCTAAGCAAAATTGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGCCTCCAAGCAATGATTTGTCAAATACCTAAGCAAAATTGAAC  842

seq1  TTTCTTCCTAGCCTTCACCAATGTCCTAGGCAGTCCTTGAGCCGACCCTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCTAGCCTTCACCAATGTCCTAGGCAGTCCTTGAGCCGACCCTG  892

seq1  GGCTTGGAATTCAGTAAGAATGTTACCTGTTCAGTAACATTCAGAATTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGAATTCAGTAAGAATGTTACCTGTTCAGTAACATTCAGAATTGC  942

seq1  CTCCAGTATTGTAAGAGAGATAGCAAAAGAAATCAGGCATTACTATCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTATTGTAAGAGAGATAGCAAAAGAAATCAGGCATTACTATCTAC  992

seq1  TACATAGAGTTAGGAATTTCAGAGCAAGCTTAGCAAAGTAAGTTTAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGTTAGGAATTTCAGAGCAAGCTTAGCAAAGTAAGTTTAGAAT  1042

seq1  TC  1051
      ||
seq2  TC  1044

seq1: chrY_1870347_1870577
seq2: B6Ng01-062A12.g_305_535

seq1  TAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  50

seq1  CAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCATA  100
      ||||||||||||||||||| |||||  |||||||||||||| ||||||||
seq2  CAACATTATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCATA  100

seq1  GGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTG  150
        |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCGTTG  150

seq1  GACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAA  200

seq1  GGGGCAGTGGGTGGGTAGGGGAGTGGGGGTG  231
      |||| |||||||||| |||||||||||||||
seq2  GGGGGAGTGGGTGGGCAGGGGAGTGGGGGTG  231