BAC Information

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BAC

Clone NameB6Ng01-062G06
ChromosomeY (Build37)7 (Build37)
Map Location 1,870,346 - 1,870,57594,442,269 - 94,443,458
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062G06.bB6Ng01-062G06.g
ACCDH882804DH882805
length4571,159
definitionDH882804|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G06, 5' end.DH882805|Mus musculus domesticus DNA, BAC clone: B6Ng01-062G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,575)(94,442,269 - 94,443,458)
sequence
aaaaatgactaagaattataaaaaattttaaatatatagatttatagata
gatgtatatatttatataaatccatcccataatcagcctacaaacgctga
caccattgcatacactagcaagatattactgaaaagatcctaatatagct
gtctcttgtgaggctatgccagggcctagcaaacacataagtggatgctc
acagtcagctattggatggatcacagggcccccaatggaggagctagaga
aaatacccaaggagctaaatggatctgcaaccctataggtggaacaacat
tatgaactaaccagtaccccagagctcttgattctagctgcatatgtatc
aaaagatggcctagtcggccatcactggaaagagaggcccattggacttg
caaactttatatgccccagtacaggggaatgccagggccaaaaagtggga
gtggggg
gaattccacactgtttaactggctatcagaacttgtccctccaatctaca
cttcaactagtattttccctcccttgaccatcactgcaagtccctggcag
tcattattctactctttgattgtgtggattgaactattgttaaatttgaa
atgtaaataacatcaggatagttgtcttctgcgtataactcacttagcta
agcacacccagctcataatgttgttacaaattagtaatttgacaaaagac
catgtctagtaaaactgtaattcacaagtttaaatatataagttattttg
tcattttagtgtgctttgctttagcttttttaggaaatccatttccattt
gatcactgttaaaatacttttcatgtttgaataaagaattatacaaaata
aatcctataatcatatgtgaagataccttgtctatctttactggtcatgt
acagtttgacaactttatatttatttatattaactcctggaacataagga
aataattattgttaataatatctcttctatatgggagaacaaagtgccat
cctgatattaatattttacacaacgaaaacaaccaccagcttggaagtta
cagaactaaaatgccaacttaaggacgctgcttcaagcaccattgtacag
cacagaaggaaatagcaggcagtaaatactttgatgacagatcaatggaa
atcaggagtaacttattttacaaaactgccctaaataaatcttccctccc
aatagctctttccataagatggtccttgttcttgttcatttttttaaaaa
atgttatttttattagatattttctttatttacatttcaaatgctatccc
ctttccttgtttttgttcttaaccattagagaagcctgagatgcaaatac
tgtagttgtactagagaaagcaaccagaatgtgtcaggaatgtgttattt
gtctagacggatttagacagtctcctgaatggactcatgtgagggagact
agcctgtcttttctaagacgagaagccactggggctaaatctcatgaggt
ctgacccttaccttggctcaatgctcagcatctgtctgagcttgttttat
cccttgccacgaagacggaattttgctagtgctttcctcaggaatgaatg
aatggccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870575
seq2: B6Ng01-062G06.b_295_508

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  CTAGAGAAAATACCCAAGGAGCTAAATGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||| ||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCAGAGCTCTTGATTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      || || |||||| |                
seq2  AGTGGGAGTGGGGG----------------  214

seq1: chr7_94442269_94443458
seq2: B6Ng01-062G06.g_69_1227 (reverse)

seq1  TTGGCCACATGTCACTATCATT--TTCCTGAGGAAAAGCACTAGCAAAAT  48
      |||||||          |||||  ||||||||| ||||||||||||||||
seq2  TTGGCCA---------TTCATTCATTCCTGAGG-AAAGCACTAGCAAAAT  40

seq1  ATCCTGTCCTCTTGTTGGCAGAGGATTAAAAAACAAGCTCAGGACAGATG  98
       ||    | ||||  |||||  ||||   |||||||||||| ||||||||
seq2  -TC----CGTCTTCGTGGCAAGGGAT---AAAACAAGCTCA-GACAGATG  81

seq1  CCTGAGCATTGAGCCCAAGGTAAGGGTCAGACCCTCACTGAGATTTAGCC  148
       |||||||||||| ||||||||||||||||| ||||| ||||||||||||
seq2  -CTGAGCATTGAG-CCAAGGTAAGGGTCAGA-CCTCA-TGAGATTTAGCC  127

seq1  CCAGTGGCTTTCTCTGTCTTTAGAAAAGACAGGGCTAGTCTCCCTCACAT  198
      |||||||| ||||| ||| |||||||||||| ||||||||||||||||| 
seq2  CCAGTGGC-TTCTC-GTC-TTAGAAAAGACA-GGCTAGTCTCCCTCACA-  172

seq1  TGAGTTCCATTCAGAGAACTGTTCTAAATCCGTTCTAGACAAATAACAAC  248
      |||| |||||||||   |||| |||||||||| |||||||||||||| ||
seq2  TGAG-TCCATTCAGGAGACTG-TCTAAATCCG-TCTAGACAAATAAC-AC  218

seq1  ATTTCCTGACACATTCTGGTTGCTTTCTCTAGTACAACTACAGTATTTGC  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTCCTGACACATTCTGGTTGCTTTCTCTAGTACAACTACAGTATTTGC  267

seq1  ATCTCAGGCTTCTCTAATGGTTAAGAACAAAAACAAGGAAAGGGGATAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGCTTCTCTAATGGTTAAGAACAAAAACAAGGAAAGGGGATAGC  317

seq1  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATAACATTTTTTAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAATGTAAATAAAGAAAATATCTAATAAAAATAACATTTTTTAAA  367

seq1  AAAATGAACAAGAACAAGGACCATCTTATGGAAAGAGCTATTGGGAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACAAGAACAAGGACCATCTTATGGAAAGAGCTATTGGGAGGGA  417

seq1  AGATTTATTTAGGGCAGTTTTGTAAAATAAGTTACTCCTGATTTCCATTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTTAGGGCAGTTTTGTAAAATAAGTTACTCCTGATTTCCATTG  467

seq1  ATCTGTCATCAAAGTATTTACTGCCTGCTATTTCCTTCTGTGCTGTACAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCATCAAAGTATTTACTGCCTGCTATTTCCTTCTGTGCTGTACAA  517

seq1  TGGTGCTTGAAGCAGCGTCCTTAAGTTGGCATTTTAGTTCTGTAACTTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTGAAGCAGCGTCCTTAAGTTGGCATTTTAGTTCTGTAACTTCC  567

seq1  AAGCTGGTGGTTGTTTTCGTTGTGTAAAATATTAATATCAGGATGGCACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTGGTTGTTTTCGTTGTGTAAAATATTAATATCAGGATGGCACT  617

seq1  TTGTTCTCCCATATAGAAGAGATATTATTAACAATAATTATTTCCTTATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCCATATAGAAGAGATATTATTAACAATAATTATTTCCTTATG  667

seq1  TTCCAGGAGTTAATATAAATAAATATAAAGTTGTCAAACTGTACATGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAGTTAATATAAATAAATATAAAGTTGTCAAACTGTACATGACC  717

seq1  AGTAAAGATAGACAAGGTATCTTCACATATGATTATAGGATTTATTTTGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGATAGACAAGGTATCTTCACATATGATTATAGGATTTATTTTGT  767

seq1  ATAATTCTTTATTCAAACATGAAAAGTATTTTAACAGTGATCAAATGGAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCTTTATTCAAACATGAAAAGTATTTTAACAGTGATCAAATGGAA  817

seq1  ATGGATTTCCTAAAAAAGCTAAAGCAAAGCACACTAAAATGACAAAATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTTCCTAAAAAAGCTAAAGCAAAGCACACTAAAATGACAAAATAA  867

seq1  CTTATATATTTAAACTTGTGAATTACAGTTTTACTAGACATGGTCTTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATATTTAAACTTGTGAATTACAGTTTTACTAGACATGGTCTTTTG  917

seq1  TCAAATTACTAATTTGTAACAACATTATGAGCTGGGTGTGCTTAGCTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTACTAATTTGTAACAACATTATGAGCTGGGTGTGCTTAGCTAAG  967

seq1  TGAGTTATACGCAGAAGACAACTATCCTGATGTTATTTACATTTCAAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTATACGCAGAAGACAACTATCCTGATGTTATTTACATTTCAAATT  1017

seq1  TAACAATAGTTCAATCCACACAATCAAAGAGTAGAATAATGACTGCCAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATAGTTCAATCCACACAATCAAAGAGTAGAATAATGACTGCCAGG  1067

seq1  GACTTGCAGTGATGGTCAAGGGAGGGAAAATACTAGTTGAAGTGTAGATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAGTGATGGTCAAGGGAGGGAAAATACTAGTTGAAGTGTAGATT  1117

seq1  GGAGGGACAAGTTCTGATAGCCAGTTAAACAGTGTGGAATTC  1190
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGACAAGTTCTGATAGCCAGTTAAACAGTGTGGAATTC  1159