BAC Information

Click to search

BAC

Clone NameB6Ng01-064D11
Chromosome11 (Build37)Y (Build37)
Map Location 69,657,490 - 69,657,974573,853 - 573,942
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik
Downstream genePlscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064D11.bB6Ng01-064D11.g
ACCDH884069DH884070
length485231
definitionDH884069|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D11, 5' end.DH884070|Mus musculus domesticus DNA, BAC clone: B6Ng01-064D11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,657,490 - 69,657,974)(573,853 - 573,942)
sequence
gaattcactatgtagcccaggttagcctccaactaacagagatatacctg
tctctacctctggtgtgctgagattaaaggcttgcaccactttgccctgc
tatgttgttcattccactaataaacctaactacagcctggcataatggct
catacctttcatcccagcactcaggaagcagagacaaggccggcctggtc
tacatagtgagttctagtcagccaggctacacggtgggggctggagtttg
aaaaaagaacacctgtgatgggatcccatgccctcttctgtcttctggtc
agaagacagctacaatgtactcatataaataaaacttaacaaacaaaaga
aaacaaaagaaaaagaaacctgcccctggcacgtttaagaattgacccaa
atggattcttcctaacaatattatcttcacagctccctcacccagtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
actttgtagaccaggctgcccttgaactcagaaatccacctgtctttgcc
tcctgagtgctaggattaaaggtgtgtgccactactgcccagccctgagg
agagttttttgttttgttttgttttgctttttgttctttcaagactgggt
ttctctgtatagccctggctgtcctggaactcactctgtagaccaggcct
catctcagaaatcctcttgcctctgcctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_69657490_69657974
seq2: B6Ng01-064D11.b_46_530 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACTGGGTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACTGGGTGAGG  50

seq1  GAGCTGTGAAGATAATATTGTTAGGAAGAATCCATTTGGGTCAATTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGAAGATAATATTGTTAGGAAGAATCCATTTGGGTCAATTCTTA  100

seq1  AACGTGCCAGGGGCAGGTTTCTTTTTCTTTTGTTTTCTTTTGTTTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGCCAGGGGCAGGTTTCTTTTTCTTTTGTTTTCTTTTGTTTGTTAA  150

seq1  GTTTTATTTATATGAGTACATTGTAGCTGTCTTCTGACCAGAAGACAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATATGAGTACATTGTAGCTGTCTTCTGACCAGAAGACAGAA  200

seq1  GAGGGCATGGGATCCCATCACAGGTGTTCTTTTTTCAAACTCCAGCCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCATGGGATCCCATCACAGGTGTTCTTTTTTCAAACTCCAGCCCCC  250

seq1  ACCGTGTAGCCTGGCTGACTAGAACTCACTATGTAGACCAGGCCGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGTAGCCTGGCTGACTAGAACTCACTATGTAGACCAGGCCGGCCTT  300

seq1  GTCTCTGCTTCCTGAGTGCTGGGATGAAAGGTATGAGCCATTATGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCTTCCTGAGTGCTGGGATGAAAGGTATGAGCCATTATGCCAGG  350

seq1  CTGTAGTTAGGTTTATTAGTGGAATGAACAACATAGCAGGGCAAAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTAGGTTTATTAGTGGAATGAACAACATAGCAGGGCAAAGTGGT  400

seq1  GCAAGCCTTTAATCTCAGCACACCAGAGGTAGAGACAGGTATATCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCTTTAATCTCAGCACACCAGAGGTAGAGACAGGTATATCTCTGT  450

seq1  TAGTTGGAGGCTAACCTGGGCTACATAGTGAATTC  485
      |||||||||||||||||||||||||||||||||||
seq2  TAGTTGGAGGCTAACCTGGGCTACATAGTGAATTC  485

seq1: chrY_573853_573942
seq2: B6Ng01-064D11.g_220_304

seq1  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCA-  49

seq1  GCTGGCCACGAACTCAGAAATCTGCCTGCCTCTGCCTCCC  90
         |||| | | ||||||||||  | ||||||||||||||
seq2  ---GGCCTC-ATCTCAGAAATCCTCTTGCCTCTGCCTCCC  85