BAC Information

Click to search

BAC

Clone NameB6Ng01-064E12
ChromosomeY (Build37)5 (Build37)
Map Location 1,870,464 - 1,870,56543,178,831 - 43,179,956
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064E12.bB6Ng01-064E12.g
ACCDH884113DH884114
length3541,098
definitionDH884113|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E12, 5' end.DH884114|Mus musculus domesticus DNA, BAC clone: B6Ng01-064E12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,464 - 1,870,565)(43,178,831 - 43,179,956)
sequence
taggtcttataaaaactagagaagcagtctgtgcatagtccatcctttca
tcttagcttcaaactttgtctctgtaactcctttcatgggtattttgttc
cctattctaaggaggaatgaagtatccatccattggtcttccctcttctt
gattttcttgtgtttcacaaattgtatcttgggtattctaagttcctgag
ctaatagccacttatcagtgaatgcatatctaatgtcttcttttgtgatt
ggtagtcggccatcattgggaagagaggccccttggtattgcaaacttta
tatgccccagtacaggggaacgccagggccaagaagtgggagtgggtggg
tagg
gaattcctcctctgctttgagtattattctgcatctttatttctcatcaa
cttaatgtagtatctgatacttccacactgcagcccttagaagtcctctg
ccaggtaagaagcaggagtacatatcattccttgaagtgcccaagctttg
taccaaggccaagaaacatctgggcacctgatgtccgaatgacaatatca
ctaggcttccagatctgtcacacttatcagtggcaggatcctctgtccca
accccactgctgtggttcatggagattctaaacaagacctgcccagtcaa
cccaaggcatccttcaagtcacagtcatttaaaatttttctaacatgctg
taattaagaatgggtaagaatatatcagtagagtggtagggtaaatggtt
cagcaggtatagcatttgatatgccagcatgaggagcagagttctggttc
cagcatccatgaataagccaggcaacatgcctgtaatcccagtgtgatgg
gggccggaggaggaaatcactgtagcaaccagactagctgaaaaggtttt
caccatgtttaggtcaaaaaaacaaaaaaacaaaaaaacaaaacaaaaaa
aacaaacaaaaaaacaaacaaacaaaaaacaggtgtttaccatgtttttt
gctctaaagcacaggtcaaaaggataggtcaagagatagggcctggatgc
tcatatgcaaattctcacacccaaattgctccactttactatatatctgt
tttctataaatataggcttgagataataatgtctatctcaaagaggaatc
gtgagggtttggtaatattagactacagtctggcacacagcaagcactta
tttaaatattagctatatacttacaaagactatgaaatggtaattcattt
cttcatattgaatatttccaagtaagtaaaagtagtgtcctgaaagacat
cttgaaagttctttgtatttctaaaatttacttgctgtcaataagagaag
tatttctttctaacttattgggactagaaggtatatttgcctcagaaatg
gctctgcctcgggggtggttagaaagcagtgacctcctctgttcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870464_1870565
seq2: B6Ng01-064E12.b_303_404

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACATGCAAACTTTATA  50
      ||||||||||||| ||| ||||||||||| ||||   |||||||||||||
seq2  TAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGTATTGCAAACTTTATA  50

seq1  TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGCAGTGGGTGGGTA  100
      |||||||||||||||||||||||||||||| ||| || ||||||||||||
seq2  TGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTA  100

seq1  GG  102
      ||
seq2  GG  102

seq1: chr5_43178831_43179956
seq2: B6Ng01-064E12.g_69_1166

seq1  GAATTCCTCCTCTGCTTTGAGTATTATTCTGCATCTTTATTTCTCATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCTGCTTTGAGTATTATTCTGCATCTTTATTTCTCATCAA  50

seq1  CTTAATGTAGTATCTGATACTTCCACACTGCAGCCCTTAGAAGTCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTAGTATCTGATACTTCCACACTGCAGCCCTTAGAAGTCCTCTG  100

seq1  CCAGGTAAGAAGCAGGAGTACATATCATTCCTTGAAGTGCCCAAGCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAAGAAGCAGGAGTACATATCATTCCTTGAAGTGCCCAAGCTTTG  150

seq1  TACCAAGGCCAAGAAACATCTGGGCACCTGATGTCCGAATGACAATATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGCCAAGAAACATCTGGGCACCTGATGTCCGAATGACAATATCA  200

seq1  CTAGGCTTCCAGATCTGTCACACTTATCAGTGGCAGGATCCTCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTCCAGATCTGTCACACTTATCAGTGGCAGGATCCTCTGTCCCA  250

seq1  ACCCCACTGCTGTGGTTCATGGAGATTCTAAACAAGACCTGCCCAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTGCTGTGGTTCATGGAGATTCTAAACAAGACCTGCCCAGTCAA  300

seq1  CCCAAGGCATCCTTCAAGTCACAGTCATTTAAAATTTTTCTAACATGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGCATCCTTCAAGTCACAGTCATTTAAAATTTTTCTAACATGCTG  350

seq1  TAATTAAGAATGGGTAAGAATATATCAGTAGAGTGGTAGGGTAAATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAATGGGTAAGAATATATCAGTAGAGTGGTAGGGTAAATGGTT  400

seq1  CAGCAGGTATAGCATTTGATATGCCAGCATGAGGAGCAGAGTTCTGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGTATAGCATTTGATATGCCAGCATGAGGAGCAGAGTTCTGGTTC  450

seq1  CAGCATCCATGAATAAGCCAGGCAACATGCCTGTAATCCCAGTGTGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCATGAATAAGCCAGGCAACATGCCTGTAATCCCAGTGTGATGG  500

seq1  GGGCCGGAGGAGGAAATCACTGTAGCAACCAGACTAGCTGAAAAGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCGGAGGAGGAAATCACTGTAGCAACCAGACTAGCTGAAAAGGTTTT  550

seq1  CACCATGTTTAGGTCAAAAAAACAAAAAAACAAAAAAACAAAACAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTTTAGGTCAAAAAAACAAAAAAACAAAAAAACAAAACAAAAAA  600

seq1  AACAAACAAAAAAACAAACAAACAAAAAACAGGTGTTTACCATGTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAAAAAACAAACAAACAAAAAACAGGTGTTTACCATGTTTTTT  650

seq1  GCTCTAAAGCACAGGTCAAAAGGATAGGTCAAGAGATAGGGCCTGGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAAGCACAGGTCAAAAGGATAGGTCAAGAGATAGGGCCTGGATGC  700

seq1  TCATATGCAAATTCTCACACCCAAATTGCTCCACTTTACTATATATCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCAAATTCTCACACCCAAATTGCTCCACTTTACTATATATCTGT  750

seq1  TTTCTATAAATATAGGCTTGAGATAATAATGTCTATCTCAAAGAGGAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATAAATATAGGCTTGAGATAATAATGTCTATCTCAAAGAGGAATC  800

seq1  GTGAGGGTTTGGTAATATTTAGACTACAGTCTGGCACACAGCAAGCACTT  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGAGGGTTTGGTAATA-TTAGACTACAGTCTGGCACACAGCAAGCACTT  849

seq1  ATTTAAATATTAGCTAATATTACTTACAAAGACTATGAAAATGGTAAATT  900
      ||||||||||||||| ||| ||||||||||||||||| ||||||| ||||
seq2  ATTTAAATATTAGCT-ATA-TACTTACAAAGACTATG-AAATGGT-AATT  895

seq1  CATTTCTTCATATTGAATTATTTCCCAAGTAAGTAAAAAGTAGTGTTCCT  950
      ||||||||||||||||| ||||| |||||||||| |||||||||| ||||
seq2  CATTTCTTCATATTGAA-TATTT-CCAAGTAAGT-AAAAGTAGTG-TCCT  941

seq1  GAAAGACATCTTGAAAAGTTTCTTTTGTTATTTTCTAAAATTTTTACTTT  1000
      ||||||||||||| ||||||   |||||   |||||||||  ||||| ||
seq2  GAAAGACATCTTG-AAAGTT--CTTTGT--ATTTCTAAAA--TTTAC-TT  983

seq1  GCTGTTCAAATTAAGAGAAGTATTTTCTTTTCTAAACTTATTTGGAACTT  1050
      |||| ||||  ||||||||||||||   ||||| |||||||| |||   |
seq2  GCTG-TCAA--TAAGAGAAGTATTT--CTTTCT-AACTTATTGGGA--CT  1025

seq1  AGAAAGGTTATATTTGCCTCAAGAAAT-GCTCTGCTCTGGGAGTTGTTTA  1099
      ||||  | |||||||||||| |||||| ||||||| || || | || |||
seq2  AGAA--GGTATATTTGCCTC-AGAAATGGCTCTGC-CTCGGGGGTGGTTA  1071

seq1  GAAAGCATGTGA-CTCTCCTGTTCTTTA  1126
      ||||||| |||| |||  ||||||||||
seq2  GAAAGCA-GTGACCTCCTCTGTTCTTTA  1098