BAC Information

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BAC

Clone NameB6Ng01-070L06
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,568 - 1,120,99429,241,481 - 29,242,092
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070L06.bB6Ng01-070L06.g
ACCDH888624DH888625
length981612
definitionDH888624|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L06, 5' end.DH888625|Mus musculus domesticus DNA, BAC clone: B6Ng01-070L06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,568 - 1,120,994)(29,241,481 - 29,242,092)
sequence
gaattctagtcacctctgctctccatgtatcctcttatgctcatagtcac
tcataactgcgttttcttttttttttttttttttttttaatttttttttt
ccattttttattaggtatttagctcatttacatttccaatgctataccaa
aagtcccccttacccacccacccccactcccctacccacccactcccccc
ctttggccctggcgttcccctgtactggggcacacaaagtctgcatgtcc
aatgggcctctctttccagtgatggccgactaggccatcttttgatacat
atgcagctagagtcaagagctcaggggtactggttagttcataatgttgt
tccacctatagggttgaagatccctttagctccttgggtactttctctag
ctcctccattgggagccctgtgatccatccattagctgactgtgagcatc
cacttctgtgtttgctaggccccggcatagtctcacaagagacagctaca
tctgggtcctttcagtaaaatcttgctagtgtatgcaatggtgtcagcat
ttggaagctgattatggggtggatccctggatatggcagtctctacatgg
tccatcctttcatctcagctccatactttgtttctgtaactccttccatg
ggtgttttgttcccacttctaaggaggggcatagtgtccacacttcagtc
ttcatttttcttgagtttcatgtgtttaggaaattgtatcttatatcgtg
ggtatcctaggttttgggctagtatccacttatcagtgagtacatattgt
gtgagttcctttgtgattgtgttacctcactcaggatgatgctctccagg
tccatccatttggctaggaatttcataaattcattctttttaatagctga
gtagtactccattgtgtagatgtaccacattttctgtatccatctctgtt
gaggggcatctgggtcttcagttctggctat
gaattccctatcggtcagtctgtctttctgtctgtctgtctgtctgtctg
tctgtctgactccgtgtatgtgagggtacgcatgtacattgttaactgta
attgttttcaatacaattaacgatcatgaataggcagccttctttaatta
caattttaaaacatcgaaagaaaagaaatacataagtaatttataagaaa
tttaaaactgtatctaagttaaaaagaaaatttaaagtgactagaaaatc
aattttaaaaacagtttagaggttacagagctaaagatagcttcttagac
attaagctttctgagttttcaattctgtattatcacatggctttgtttgc
ttgcttgtttgttttttctttaccacttctttctttttctcccaccagaa
caagattttgcgttaaaggaccagattgtcatgtagttttagtataaaac
ttgagggaaaagaagccttgtgatatctataatcactacacaagaactgc
agtaagaatgtagattgtgggttacaggaatactattccaactctcttgt
aaatgagaagagagaaaagaaagagagaaagagagagagagagagggagg
gagggagggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120568_1120994
seq2: B6Ng01-070L06.b_114_541

seq1  TTTTTTTTTTTTTTTTAA-TTTTTTTTTCCATTTTTTATTAGGTATTTAA  49
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  TTTTTTTTTTTTTTTTAATTTTTTTTTTCCATTTTTTATTAGGTATTTAG  50

seq1  CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACC  99
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACC  100

seq1  CCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTG  149
      ||||||||||| |||||||||||||||  |||||||||||  ||||||||
seq2  CCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTG  150

seq1  TACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGA  199
      |||||||||| | ||||| |||| ||||||||||||||||||||||||||
seq2  TACTGGGGCACACAAAGTCTGCATGTCCAATGGGCCTCTCTTTCCAGTGA  200

seq1  TGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTC  250

seq1  CGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATC  299
       |||||||||||||| |||||| ||||||||||||||||||||| |||||
seq2  AGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGATC  300

seq1  CCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATG  349
      ||||||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  CCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTG  350

seq1  ATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCC  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCC  400

seq1  CGGCATAGTCTCACAAGAGACAGCTACA  427
      ||||||||||||||||||||||||||||
seq2  CGGCATAGTCTCACAAGAGACAGCTACA  428

seq1: chr8_29241481_29242092
seq2: B6Ng01-070L06.g_69_680

seq1  GAATTCCCTATCGGTCAGTCTGTCTTTCTGTCTGTCTGTCTGTCTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATCGGTCAGTCTGTCTTTCTGTCTGTCTGTCTGTCTGTCTG  50

seq1  TCTGTCTGACTCCGTGTATGTGAGGGTACGCATGTACATTGTTAACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGACTCCGTGTATGTGAGGGTACGCATGTACATTGTTAACTGTA  100

seq1  ATTGTTTTCAATACAATTAACGATCATGAATAGGCAGCCTTCTTTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTCAATACAATTAACGATCATGAATAGGCAGCCTTCTTTAATTA  150

seq1  CAATTTTAAAACATCGAAAGAAAAGAAATACATAAGTAATTTATAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTAAAACATCGAAAGAAAAGAAATACATAAGTAATTTATAAGAAA  200

seq1  TTTAAAACTGTATCTAAGTTAAAAAGAAAATTTAAAGTGACTAGAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACTGTATCTAAGTTAAAAAGAAAATTTAAAGTGACTAGAAAATC  250

seq1  AATTTTAAAAACAGTTTAGAGGTTACAGAGCTAAAGATAGCTTCTTAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAAACAGTTTAGAGGTTACAGAGCTAAAGATAGCTTCTTAGAC  300

seq1  ATTAAGCTTTCTGAGTTTTCAATTCTGTATTATCACATGGCTTTGTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTTTCTGAGTTTTCAATTCTGTATTATCACATGGCTTTGTTTGC  350

seq1  TTGCTTGTTTGTTTTTTCTTTACCACTTCTTTCTTTTTCTCCCACCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTGTTTTTTCTTTACCACTTCTTTCTTTTTCTCCCACCAGAA  400

seq1  CAAGATTTTGCGTTAAAGGACCAGATTGTCATGTAGTTTTAGTATAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTGCGTTAAAGGACCAGATTGTCATGTAGTTTTAGTATAAAAC  450

seq1  TTGAGGGAAAAGAAGCCTTGTGATATCTATAATCACTACACAAGAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAAAAGAAGCCTTGTGATATCTATAATCACTACACAAGAACTGC  500

seq1  AGTAAGAATGTAGATTGTGGGTTACAGGAATACTATTCCAACTCTCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATGTAGATTGTGGGTTACAGGAATACTATTCCAACTCTCTTGT  550

seq1  AAATGAGAAGAGAGAAAAGAAAGAGAGAAAGAGAGAGAGAGAGAGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAAGAGAGAAAAGAAAGAGAGAAAGAGAGAGAGAGAGAGGGAGG  600

seq1  GAGGGAGGGAAG  612
      ||||||||||||
seq2  GAGGGAGGGAAG  612