BAC Information

Click to search

BAC

Clone NameB6Ng01-082H21
ChromosomeY (Build37)1 (Build37)
Map Location 573,321 - 573,49043,561,651 - 43,562,851
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082H21.bB6Ng01-082H21.g
ACCDH897030DH897031
length4901,163
definitionDH897030|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H21, 5' end.DH897031|Mus musculus domesticus DNA, BAC clone: B6Ng01-082H21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,490)(43,561,651 - 43,562,851)
sequence
gaattctgtcctcctatgacagagagttgaagagcaacccaatccaaggt
tgcctgaggcctctttctcagtgcctttaacctgatcaagaagtgcctgg
tcatggaaggggaagagagaatgaattctgtcctcctatgacagagagtt
gaagagcaacccagtccaaggttgcctgaggcctctttctcagtgccttt
aacctgatcgtgaaagaagtagcctgaaaccctgatatagctgtctcctg
tgaggctatcccagtgcctggcaaatacaaaagtggatgctcacagtcat
ctattagatggaatacagggcccccaatggaggagctagagaaagtaccc
aaggagctaaaggggtccctataggaggaacaacaatatgaactaaccag
tacccctagagctcatgtctctagctgcatatgtaacagaggatggccta
gtcggccatcaataggaggagaggcccttggtcttgcaaa
gaattccaggctatttcaggttaaagaggagcaccctatcacaaaagtca
gaaaatcaagacaggcatactagagaacaatgaataggccaggtatgttg
tgcataccttaatcccagcatcagaaggcagaggcaggtagatctgagtt
tgggactagcctagtgtacatagtgagttccagggcagccagagctacat
agtgagactgtgtctcaaagggggaagagagatgaagagaatgagaacct
gataggtaaatacagtttgtaagtataactctccttaggttgtgcttttg
tgtcattttctaaattctaggatcatgtggctattcacaccggattcaag
agtatagtctgtatggggatgaacctttgaaaggaaaagatttagggcct
gagtgacactgcctgcttaaggccatttggctattaacagtgcatcttat
gatgtaattgagaagtgacagttttctgagtgtggtaggcccaacagcat
tggagagggtgatgtaggactgagtttgaggtcaggctaagctatatagt
atgttctgggatagcctggactaaagtgagaccctgtctccaaagcagac
acaagcagaacaggcagacagcaaacagtaccagcaccccccccccaaaa
aaaaaaaacaacagcactctccccaaaactatacaaacaaaaccaaaaac
ctgaaagtttattgacaggtgaacatgccgtggtagggttctttctggag
ccacgaggaccggaaaagttctcttcatggtggcttttcctctctgggta
gttgtgtaaatgttagactgtagtctatgattttttatgggattagaaag
tgatcttccagaagagcctcttagaatttgtgtctcaacaatgggggttt
ggttggaactgaaggcagagatgtttccgagaagagagaaaacactgcag
accctgcggtctggcatgaaaaaagatgtgggcgcttattgcttggccat
attagggatattttaaacagctatatagcccaattattaaatttaatcct
atattatagaacctcatgttattttattcataagccctttaaagacttca
ttggtttagttaaataattggatagcctcacgactttttaactaagtacg
ttggctcaatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573490
seq2: B6Ng01-082H21.b_355_518

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||      |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTC------CCT  44

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      ||||  |||||||||||||||| ||||||||| ||  |||||||||||||
seq2  ATAGGAGGAACAACAATATGAACTAACCAGTACCCCTAGAGCTCATGTCT  94

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| |||| ||||||||||| |||||||| | ||| ||
seq2  CTAGCTGCATATGTAACAGAGGATGGCCTAGTCGGCCATCAATAGGAGGA  144

seq1  GAGGCCCCTTGGTCTTGCAAA  170
      |||| ||||||||||||||||
seq2  GAGG-CCCTTGGTCTTGCAAA  164

seq1: chr1_43561651_43562851
seq2: B6Ng01-082H21.g_69_1231

seq1  GAATTCCAGGCTATTTCAGGTTAAAGAGGAGCACCCTATCACAAAAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTATTTCAGGTTAAAGAGGAGCACCCTATCACAAAAGTCA  50

seq1  GAAAATCAAGACAGGCATACTAGAGAACAATGAATAGGCCAGGTATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAAGACAGGCATACTAGAGAACAATGAATAGGCCAGGTATGTTG  100

seq1  TGCATACCTTAATCCCAGCATCAGAAGGCAGAGGCAGGTAGATCTGAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCTTAATCCCAGCATCAGAAGGCAGAGGCAGGTAGATCTGAGTT  150

seq1  TGGGACTAGCCTAGTGTACATAGTGAGTTCCAGGGCAGCCAGAGCTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTAGCCTAGTGTACATAGTGAGTTCCAGGGCAGCCAGAGCTACAT  200

seq1  AGTGAGACTGTGTCTCAAAGGGGGAAGAGAGATGAAGAGAATGAGAACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACTGTGTCTCAAAGGGGGAAGAGAGATGAAGAGAATGAGAACCT  250

seq1  GATAGGTAAATACAGTTTGTAAGTATAACTCTCCTTAGGTTGTGCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAAATACAGTTTGTAAGTATAACTCTCCTTAGGTTGTGCTTTTG  300

seq1  TGTCATTTTCTAAATTCTAGGATCATGTGGCTATTCACACCGGATTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTCTAAATTCTAGGATCATGTGGCTATTCACACCGGATTCAAG  350

seq1  AGTATAGTCTGTATGGGGATGAACCTTTGAAAGGAAAAGATTTAGGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGTCTGTATGGGGATGAACCTTTGAAAGGAAAAGATTTAGGGCCT  400

seq1  GAGTGACACTGCCTGCTTAAGGCCATTTGGCTATTAACAGTGCATCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACACTGCCTGCTTAAGGCCATTTGGCTATTAACAGTGCATCTTAT  450

seq1  GATGTAATTGAGAAGTGACAGTTTTCTGAGTGTGGTAGGCCCAACAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATTGAGAAGTGACAGTTTTCTGAGTGTGGTAGGCCCAACAGCAT  500

seq1  TGGAGAGGGTGATGTAGGACTGAGTTTGAGGTCAGGCTAAGCTATATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGGTGATGTAGGACTGAGTTTGAGGTCAGGCTAAGCTATATAGT  550

seq1  ATGTTCTGGGATAGCCTGGACTAAAGTGAGACCCTGTCTCCAAAGCAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGGGATAGCCTGGACTAAAGTGAGACCCTGTCTCCAAAGCAGAC  600

seq1  ACAAGCAGAACAGGCAGACAGCAAACAGTACCAGCACCCCCCCCCCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGAACAGGCAGACAGCAAACAGTACCAGCACCCCCCCCCCAAAA  650

seq1  AAAAAAAACAACAGCACTCTCCCCAAAACTATACAAACAAAACCAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAACAGCACTCTCCCCAAAACTATACAAACAAAACCAAAAAC  700

seq1  CTGAAAGTTTATTGACAGGTGAACATGCCGTGGTAGGGTTCTTTCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTTTATTGACAGGTGAACATGCCGTGGTAGGGTTCTTTCTGGAG  750

seq1  CCACGAGGACCGGAAAAGTTCTCTTCATGGTGGCTTTTCCTCTCTGGGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGAGGACCGGAAAAGTTCTCTTCATGGTGGCTTTTCCTCTCTGGGTA  800

seq1  GTTGTGTAAATGTTAGACTGTAGTCTATGATTTTTTATGGGAATAGAAGG  850
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  GTTGTGTAAATGTTAGACTGTAGTCTATGATTTTTTATGGGATTAGAAAG  850

seq1  TGATCTTCCAGAAGAGCCTCTTAGAATTTGTGTCTCAACAATGAGGGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGATCTTCCAGAAGAGCCTCTTAGAATTTGTGTCTCAACAATGGGGGTTT  900

seq1  GGTTGGAACTGAAGGCAGAGATGTTTCCGAG-AGAGAGAAAACACTGCAG  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTTGGAACTGAAGGCAGAGATGTTTCCGAGAAGAGAGAAAACACTGCAG  950

seq1  ACACTGCGGTCTGGCATGAAAAAAAGAATGTGGGCGCTTA-TGCTTGGCC  998
      || |||||||||||||||||||||   ||||||||||||| |||||||||
seq2  ACCCTGCGGTCTGGCATGAAAAAA--GATGTGGGCGCTTATTGCTTGGCC  998

seq1  AATATTAGGGATATTTTAAAACAGCTAAATATAAGCACAATATATTAAAT  1048
       |||||||||||||||| ||||||||| ||   ||| |||| ||||||| 
seq2  -ATATTAGGGATATTTT-AAACAGCTATAT---AGCCCAAT-TATTAAA-  1041

seq1  TTTAATTCACATATAATAATTAGAAACCTCCATGTTAAATTTTTATATCC  1098
      ||||||   | |||| ||  ||| ||||| |||||||     || ||| |
seq2  TTTAAT---CCTATATTA--TAG-AACCT-CATGTTA-----TTTTATTC  1079

seq1  ATTAGCCTCTTAAAAGACTTCATTTGTTTTTTAGTTAAAATAAATTTGAA  1148
      || |||| ||| |||||||||||| |   ||||||| ||||||  ||| |
seq2  ATAAGCC-CTTTAAAGACTTCATTGG---TTTAGTT-AAATAA--TTGGA  1122

seq1  TTAGAGCTACAGAACTTTTTTTTTAACTAAAGTTACCTGTTGGCTCAAAT  1198
      |   |||  ||  ||    |||||||||||   |||  |||||||| |||
seq2  T---AGCCTCACGAC----TTTTTAACTAA--GTAC--GTTGGCTC-AAT  1160

seq1  CCC  1201
      |||
seq2  CCC  1163