BAC Information

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BAC

Clone NameB6Ng01-084P02
ChromosomeY (Build37)6 (Build37)
Map Location 573,321 - 573,401105,601,634 - 105,602,641
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084P02.bB6Ng01-084P02.g
ACCDH898752DH898753
length492999
definitionDH898752|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P02, 5' end.DH898753|Mus musculus domesticus DNA, BAC clone: B6Ng01-084P02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,401)(105,601,634 - 105,602,641)
sequence
gaattcccataatggaagaatgaatacagagaatgtggttaatttacaca
acagaatactgtgtggattaagaaagaagacatcatgagttttgcaggca
aattggtggatttagaaaatacccttagtaactcagacccaaaaagactt
gcatagtatgtcctcaattataagcagatattagccaaaaaaaaaaaaag
gacaaaatacccagcatacaatccacagatcttaagaaggttaaatatcc
cccataatcagcatccaaacgctgacaccattgcatacactagcaagatt
tttatcgaaaggacccagatgtagctgtctcttgtgtgactatgccgggg
cctagcaaacacagaagtggatgctcacagtcagctaatggatggatcac
agggctcccaatggaggagctagagaaagtacccaaggagctaaagggat
ctgcaaccctataggtggaacaacattatgaactaaccagta
gaattcaacacttagtgaacactattcaactttcaggacacagggggctg
cgtctttgtcgtccttcattgccttcagtgatagctcagctattattgag
acctgggtctaatggtccctgaagatatattttcctaattcttgacatgt
ttaaaatgactaaatgcagatgcataagacctcggggaagggcactcatg
ttgacatttgtttacttctgtggaatgtaccatggagggaattttttcaa
aaagcaggcatggtcacatgctcacatctatatttattttatggcatgtg
tgtagaggtcatagggcaacttcagtaatttgtccttacctactaccttg
tttgacataggggcctgtgttcaaaactgtgttttccaagctcattggcc
tgtgggattctggaggttgtcctgtttcttttcctcttcttgaaggagga
ataatggggtgacagatatacactaatgtgtctatctttatatggcttct
gtctatgcaaactccattcctcagttacacggaaagtgttttttcaaatg
tgtcaaatagctgctgctttgtgtgacttaatatgccattaaaaagaaaa
aaaaaagaagtaaacacttggatttcttcaatgcatattagagactctga
ccctttatctcttaaagaagatgcctaagtgcataattctttgttcttca
atgttaaaaatatttaatagttatatgataatcagaaggattaaagactc
tattttttccatgatgagttattttcttggagtaaaaacagtcaatactt
cagtggcatctgtttcagtaagatcatcaataataaaacaaactagcctg
gcgtgatggtgcaagcctttaatcccagcactcgggaggcagagccaggc
agatttctgagttcgtgccagactggtctacaaagtgagttcagaacagc
caggctatgcagagaaatcctgtctcaaaaaacaaaacaaaacagagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573401
seq2: B6Ng01-084P02.b_456_537

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA  81
      |||| |||||||||| |||||| |||||||||
seq2  ATAGGTGGAACAACATTATGAACTAACCAGTA  82

seq1: chr6_105601634_105602641
seq2: B6Ng01-084P02.g_68_1066

seq1  GAATTCAACACTTAGTGAACACTATTCAACTTTCAGGACACAGGGGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTTAGTGAACACTATTCAACTTTCAGGACACAGGGGGCTG  50

seq1  CGTCTTTGTCGTCCTTCATTGCCTTCAGTGATAGCTCAGCTATTATTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTTGTCGTCCTTCATTGCCTTCAGTGATAGCTCAGCTATTATTGAG  100

seq1  ACCTGGGTCTAATGGTCCCTGAAGATATATTTTCCTAATTCTTGACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTCTAATGGTCCCTGAAGATATATTTTCCTAATTCTTGACATGT  150

seq1  TTAAAATGACTAAATGCAGATGCATAAGACCTCGGGGAAGGGCACTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGACTAAATGCAGATGCATAAGACCTCGGGGAAGGGCACTCATG  200

seq1  TTGACATTTGTTTACTTCTGTGGAATGTACCATGGAGGGAATTTTTTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTGTTTACTTCTGTGGAATGTACCATGGAGGGAATTTTTTCAA  250

seq1  AAAGCAGGCATGGTCACATGCTCACATCTATATTTATTTTATGGCATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGCATGGTCACATGCTCACATCTATATTTATTTTATGGCATGTG  300

seq1  TGTAGAGGTCATAGGGCAACTTCAGTAATTTGTCCTTACCTACTACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGGTCATAGGGCAACTTCAGTAATTTGTCCTTACCTACTACCTTG  350

seq1  TTTGACATAGGGGCCTGTGTTCAAAACTGTGTTTTCCAAGCTCATTGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATAGGGGCCTGTGTTCAAAACTGTGTTTTCCAAGCTCATTGGCC  400

seq1  TGTGGGATTCTGGAGGTTGTCCTGTTTCTTTTCCTCTTCTTGAAGGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATTCTGGAGGTTGTCCTGTTTCTTTTCCTCTTCTTGAAGGAGGA  450

seq1  ATAATGGGGTGACAGATATACACTAATGTGTCTATCTTTATATGGCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGGTGACAGATATACACTAATGTGTCTATCTTTATATGGCTTCT  500

seq1  GTCTATGCAAACTCCATTCCTCAGTTACACGGAAAGTGTTTTTTCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGCAAACTCCATTCCTCAGTTACACGGAAAGTGTTTTTTCAAATG  550

seq1  TGTCAAATAGCTGCTGCTTTGTGTGACTTAATATGCCATTAAAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATAGCTGCTGCTTTGTGTGACTTAATATGCCATTAAAAAGAAAA  600

seq1  AAAAAAGAAGTAAACACTTGGATTTCTTCAATGCATATTAGAGACTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGTAAACACTTGGATTTCTTCAATGCATATTAGAGACTCTGA  650

seq1  CCCTTTATCTCTTAAAGAAGATGCCTAAGTGCATAATTCTTTGTTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATCTCTTAAAGAAGATGCCTAAGTGCATAATTCTTTGTTCTTCA  700

seq1  ATGTTAAAAATATTTAATAGTTATATGATAATCAGAAGGATTAAAGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAAATATTTAATAGTTATATGATAATCAGAAGGATTAAAGACTC  750

seq1  TATTTTTTCCATGATGAGTTATTTTCTTGGAGTAAAAACAGTCAATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTCCATGATGAGTTATTTTCTTGGAGTAAAAACAGTCAATACTT  800

seq1  CAGTGGCATCTGTTTCAGTAAGATCATCAATAATAAAACAAACTAGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCATCTGTTTCAGTAAGATCATCAATAATAAAACAAACTAGCCTG  850

seq1  GCGTGATGGTGCAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGATGGTGCAAGCCTTTAATCCCAGCACTCGGGAGGCAGAGCCAGGC  900

seq1  AGATTTCTGAGTTCGTGGCCAGACTGGTCTACAAAGTGAGTTTCAGAACA  950
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGATTTCTGAGTTCGT-GCCAGACTGGTCTACAAAGTGAG-TTCAGAACA  948

seq1  GCCAGGGCTATGCAGAGAAACCCTGTCTCAAAAAAAACAAAAAACAAAAA  1000
      |||| ||||||||||||||| |||||||||||||    | ||||||||| 
seq2  GCCA-GGCTATGCAGAGAAATCCTGTCTCAAAAA----ACAAAACAAAA-  992

seq1  CAAGAGAA  1008
        ||||||
seq2  -CAGAGAA  999