BAC Information

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BAC

Clone NameB6Ng01-085O06
ChromosomeY (Build37)3 (Build37)
Map Location 2,652,627 - 2,652,69299,097,571 - 99,098,663
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244
Downstream geneLOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085O06.bB6Ng01-085O06.g
ACCDH899438DH899439
length9791,085
definitionDH899438|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O06, 5' end.DH899439|Mus musculus domesticus DNA, BAC clone: B6Ng01-085O06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,652,627 - 2,652,692)(99,097,571 - 99,098,663)
sequence
gaattcataactgaggaataccaaatggctaagaagcaccgaaagaaatg
ttcaaagtccttagctgttattagcgttctcacgcccggccaggaagaac
acagcaaaccagaatcttctgcggcaaaactttattgcttacatcttcag
gagcaagagtgtaagaagcaagagagagagaaaacgaaaccccgtcccta
ttaaggagaattatccttcgcctaggacgtgtcactccctgattggctgc
agcccatcggccgagttgacgtcacggggaaggcagagcacatggagtgg
agaaccaccctcggcacatgcgcagattatttgtttaccacttagaacac
agctgtcagcgccatcttgtaacggcgaatgtgggcgcggctcccaacat
ctccccctttccttttaataagagcaaataggccacccatattaatgaga
gtggagatagaggtcaaatccccagtgtgtaggtaaaggagccatgtaca
ggattagctcttaggctcacaggcttttacccagagcaaccctgacctgc
tcccgtgtcgttttgcctggagagaaggacacttggacactcaaccttct
tgaaagatgacatgtctccctagaataggctcatatatgccgcagagcct
ttctactgcagtgcttagccgtgcaactctctcgggctgctgaagcacac
tcactctatcccgtgcaatgagactagcctcatgggatataagagctgag
tggccagcgacctattgcctaagcatagatatatcaggggaagctccatg
ttctagtcctgcaagcgcctgggcaataaccaccttgtctctcctagttt
gggccttaagcttacagaccaatcaaagaagcaacactaatccacagcaa
agtgtatctccaaatatattaatcccacccattttttaaagaaagaaatg
ctgaggagatccaattgggtaatcctttg
gaattcaggctttgagacgaaacactgggagaagtttgtctagagcttcg
cttcaccgaagcaaatgcttatcgtctccattgtacaaaccaggcaatag
ctatctagcaataggaaatgaagcacttcacactggggagttgtgatggg
aagggggagtgagctgcatgagcatgaggaagtaggcagaatccagagaa
ctggaatcccactgagccacactgctccctcccgaagtctcaatttcttc
atctcgaatggacgaatggacgtggcgctcagttttagcagtgtttgaag
ttcatcaagagattgctgtgagggaaaaagattagctgtgatgttgataa
tgggcatttgcaagtgcatttacagtttacaaagtgcttcatgtgcatta
ttgtgctcttctggtgactcatcacattgggcatgtggcaatgtgggcac
tcctcacagctgggggcagagcactggccagggaaggtagcttccttcag
gtgacatctttctgaagggaaggaacccgggctcactcttctgctttcag
attcaaatccaaggttccttttcacaggaaaatgatgaataattcagagt
tgacttgatttatcattcactttgatgacagcaaagcgtcttcagtgtca
ccaggtggtaaaaatagacctttgagccaccagggcaaggaggttctctg
cagtagacaaattgagctcaccacagtgtcctttcctctggcagactggg
ccaccacagcctttaggaaagccttggcatgggcagccccaccacctgct
gtgcctagttgctgcttctcagtgccagtgacacacacacacacacacac
acacacacacacacacacacacacacacagcctcagaggatatgggatag
gagtttctgagttgtggggtcacccacagagtcagagagcatatttctgg
ccaagaactgtgtgtcctctctttacacagcaaggtagtgtggttttgcc
catgaaagtagaaactatgaagcaccgatttcctgtgccactgatgctta
ctgaaacttagggaaaagagtggaaagtataacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2652627_2652692
seq2: B6Ng01-085O06.b_362_426 (reverse)

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |  | ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAA  49

seq1  TAGTCTGCGCATGTGC  66
      || |||||||||||||
seq2  TAATCTGCGCATGTGC  65

seq1: chr3_99097571_99098663
seq2: B6Ng01-085O06.g_70_1154

seq1  GAATTCAGGCTTTGAGACGAAACACTGGGAGAAGTTTGTCTAGAGCTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTTTGAGACGAAACACTGGGAGAAGTTTGTCTAGAGCTTCG  50

seq1  CTTCACCGAAGCAAATGCTTATCGTCTCCATTGTACAAACCAGGCAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCGAAGCAAATGCTTATCGTCTCCATTGTACAAACCAGGCAATAG  100

seq1  CTATCTAGCAATAGGAAATGAAGCACTTCACACTGGGGAGTTGTGATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGCAATAGGAAATGAAGCACTTCACACTGGGGAGTTGTGATGGG  150

seq1  AAGGGGGAGTGAGCTGCATGAGCATGAGGAAGTAGGCAGAATCCAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAGTGAGCTGCATGAGCATGAGGAAGTAGGCAGAATCCAGAGAA  200

seq1  CTGGAATCCCACTGAGCCACACTGCTCCCTCCCGAAGTCTCAATTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCCACTGAGCCACACTGCTCCCTCCCGAAGTCTCAATTTCTTC  250

seq1  ATCTCGAATGGACGAATGGACGTGGCGCTCAGTTTTAGCAGTGTTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGAATGGACGAATGGACGTGGCGCTCAGTTTTAGCAGTGTTTGAAG  300

seq1  TTCATCAAGAGATTGCTGTGAGGGAAAAAGATTAGCTGTGATGTTGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAGAGATTGCTGTGAGGGAAAAAGATTAGCTGTGATGTTGATAA  350

seq1  TGGGCATTTGCAAGTGCATTTACAGTTTACAAAGTGCTTCATGTGCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTTGCAAGTGCATTTACAGTTTACAAAGTGCTTCATGTGCATTA  400

seq1  TTGTGCTCTTCTGGTGACTCATCACATTGGGCATGTGGCAATGTGGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCTTCTGGTGACTCATCACATTGGGCATGTGGCAATGTGGGCAC  450

seq1  TCCTCACAGCTGGGGGCAGAGCACTGGCCAGGGAAGGTAGCTTCCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGCTGGGGGCAGAGCACTGGCCAGGGAAGGTAGCTTCCTTCAG  500

seq1  GTGACATCTTTCTGAAGGGAAGGAACCCGGGCTCACTCTTCTGCTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACATCTTTCTGAAGGGAAGGAACCCGGGCTCACTCTTCTGCTTTCAG  550

seq1  ATTCAAATCCAAGGTTCCTTTTCACAGGAAAATGATGAATAATTCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAATCCAAGGTTCCTTTTCACAGGAAAATGATGAATAATTCAGAGT  600

seq1  TGACTTGATTTATCATTCACTTTGATGACAGCAAAGCGTCTTCAGTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGATTTATCATTCACTTTGATGACAGCAAAGCGTCTTCAGTGTCA  650

seq1  CCAGGTGGTAAAAATAGACC-TTGAGCCACCAGGGCAAGGAGGTTCTCTG  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCAGGTGGTAAAAATAGACCTTTGAGCCACCAGGGCAAGGAGGTTCTCTG  700

seq1  CAGTAGACAAATTGAGCTCACCACAGTGTCCTTTCCTCTGGCAGACTGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGACAAATTGAGCTCACCACAGTGTCCTTTCCTCTGGCAGACTGGG  750

seq1  CCACCACAGCCTTTAGGAAAGCCTTGGCATGGGCAGCCCCACCACCTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACAGCCTTTAGGAAAGCCTTGGCATGGGCAGCCCCACCACCTGCT  800

seq1  GTGCCTAGTTGCTGCTTCTCAGTGCCAGTGACACACACACACACACACAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGTTGCTGCTTCTCAGTGCCAGTGACACACACACACACACACAC  850

seq1  ACACACACACACACACACACACACACACAGCCTCAGAGGATATGGGATAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAGCCTCAGAGGATATGGGATAG  900

seq1  GAGTTTCTGAGGTTGTGGGGTCACCCACAGAGTCCAGAGAGCATATTTCT  949
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  GAGTTTCTGA-GTTGTGGGGTCACCCACAGAGT-CAGAGAGCATATTTCT  948

seq1  GGCCAAGGAACTGTGTGT-CTCTCTTTACAACAGCAAAGTTGGTGTGGTT  998
      |||||| ||||||||||| |||||||||| ||||| ||| | ||||||||
seq2  GGCCAA-GAACTGTGTGTCCTCTCTTTAC-ACAGC-AAGGTAGTGTGGTT  995

seq1  TTGGCCAATGAGAGTAAGAAACTAGTGAGCACCGAGTTTCTGTGCCACTG  1048
      || ||| |||| ||| ||||||||   |||||||| || |||||||||||
seq2  TT-GCCCATGAAAGT-AGAAACTATGAAGCACCGATTTCCTGTGCCACTG  1043

seq1  ATGCTTTACTGAGACTTTGGGAAGAAGAGTGAGAAAGTATAACTA  1093
      |||| ||||||| |||| ||||| ||||||| |||||||||||||
seq2  ATGC-TTACTGAAACTTAGGGAA-AAGAGTG-GAAAGTATAACTA  1085