BAC Information

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BAC

Clone NameB6Ng01-086O07
ChromosomeY (Build37)5 (Build37)
Map Location 573,321 - 573,60539,683,607 - 39,684,623
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086O07.bB6Ng01-086O07.g
ACCDH900170DH900171
length8261,011
definitionDH900170|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O07, 5' end.DH900171|Mus musculus domesticus DNA, BAC clone: B6Ng01-086O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,605)(39,683,607 - 39,684,623)
sequence
gaattctttgtttagctctgtgccccatttttaatggggttatctgggga
cccatcccatattcagccaccaaacacagacactattgcatacaccagca
agattttgctgaaaggaccctgatatagctgtctcttgtgaggctatgcc
agtgcctaacaaacacagaagtgggtgctcacagtcagctattggatgga
acacagggcccccaatggaagagctagagaaagtacccaaggagctgaag
gggtctgccaccctataggtggaacaacaatacgaactaactagtacccc
cagagctcgtgtctctagctgcatatgtagcagaagatggtctagttgcc
catcattgggaaaagaaaccccttggtcttgtaaactttatatgccccag
tacaggggaacagcagggccaagaagtgggagtgggtaggtaggcaagca
gggtgggaggagggtataggggactttcaggatagcatttgaaatgtaaa
tgaagaaaatacctaataaaaattggaaagagaaaaaaaaacaaattgaa
ataaaactaaaaataaaaagcctatgaaatcaaactaaaagctcaaagat
cagcattgcctaaggatgaaaatatgtggaagatagatagaatctcatgt
ctcccaaacaatgtaaaaagagatagatgagtcagtaaaagaaaatgtta
aaccctaaataaatacaggtacaaaaccttacaatagtctgggacactat
aaaaaaggaccaaccctatgaatagtaggtagaaaagaaggagaagaaac
ttgaagtcaatatcatagaaaatata
gaattcttatgcttgcatgtccattgtagccatgcagtagtgcttaatca
ggaaaccagcttggtcttggtctaaactaatcaatagtgagttcctttaa
ttgataaaagttctccatttccctccagttatttaccttgcttcatcatg
ggtggggcgagggaggggaaggatccactaattgcatgaataaatatttt
aaggaaaaatagctgttcttgaggtagatgtactatatactttttattat
tattttgcggttttttttatgtatggaaagattggaaaagtatgatctgg
taagagaagccaccttaaagattagatattgtacttttatgttttaatgt
atttttgcttctttgcatattattatcgcctctcaatgaccatttgttgt
tttgaaaataaactataagtggagagagagtggggagattagttgtttcc
ttgtggcagagcatgctgtggaatcaacttgtctgacctctgaaatacaa
cttgagctacattccaggctgtcaccagttttcctgtctgtcctgtgtgc
tggtaacaattgccttttgataagattcagccgaccaaggcttattcatt
cttctgtggggccagttcatttgaaagtgtgctgatcctacagaaaaggc
tcccattctgggactgcctcctggggctgcctccattctgcagctctgga
aagggtctgcacagagctcataaattgcctgcctccttaaaatcaaccat
gctgtaaggcagcacacacaacacatattagcgggtcatggcaccatctc
agaggctgagtgtgatagaactgcaaactcaacctacaaggaacctccct
tggtggctgtccattcctagttaatgctttttctcttttctagcctccca
cataccttctttgaggaatatgatgcttcaccctgaagaggaggctatcc
tattaggataaatgtgtgggttatagctaagaactgcagcaagatcctat
tctctattctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573605
seq2: B6Ng01-086O07.b_262_547

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||||| |||||||||||||||||||||||||| ||||| ||||| | |||
seq2  ATGGAAGAGCTAGAGAAAGTACCCAAGGAGCTGAAGGGGTCTGCCACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| ||||||||||||| ||| |||| |||| || |||||||| |||||
seq2  ATAGGTGGAACAACAATACGAACTAACTAGTACCCCCAGAGCTCGTGTCT  100

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| |||||||||| ||||||| ||||||||||||| |
seq2  CTAGCTGCATATGTAGCAGAAGATGGTCTAGTTGCCCATCATTGGGAAAA  150

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||  ||||||||||||| |||||||||||||||||||||||||||||| |
seq2  GAAACCCCTTGGTCTTGTAAACTTTATATGCCCCAGTACAGGGGAACAGC  200

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCAAGGCAGGGGGAGGA  249
      ||||||||||||||||||  ||| ||||||  |||| ||  || ||||| 
seq2  AGGGCCAAGAAGTGGGAGTGGGTAGGTAGGCAAGCAGGGTGGGAGGAGGG  250

seq1  TATAGGGGACTTTTGGGATAGCATTTGAAATGTAAA  285
      |||||||||||||  |||||||||||||||||||||
seq2  TATAGGGGACTTTCAGGATAGCATTTGAAATGTAAA  286

seq1: chr5_39683607_39684623
seq2: B6Ng01-086O07.g_70_1080

seq1  GAATTCTTATGCTTGCATGTCCATTGTAGCCATGCAGTAGTGCTTAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGCTTGCATGTCCATTGTAGCCATGCAGTAGTGCTTAATCA  50

seq1  GGAAACCAGCTTGGTCTTGGTCTAAACTAATCAATAGTGAGTTCCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAGCTTGGTCTTGGTCTAAACTAATCAATAGTGAGTTCCTTTAA  100

seq1  TTGATAAAAGTTCTCCATTTCCCTCCAGTTATTTACCTTGCTTCATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAGTTCTCCATTTCCCTCCAGTTATTTACCTTGCTTCATCATG  150

seq1  GGTGGGGCGAGGGAGGGGAAGGATCCACTAATTGCATGAATAAATATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCGAGGGAGGGGAAGGATCCACTAATTGCATGAATAAATATTTT  200

seq1  AAGGAAAAATAGCTGTTCTTGAGGTAGATGTACTATATACTTTTTATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATAGCTGTTCTTGAGGTAGATGTACTATATACTTTTTATTAT  250

seq1  TATTTTGCGGTTTTTTTTATGTATGGAAAGATTGGAAAAGTATGATCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCGGTTTTTTTTATGTATGGAAAGATTGGAAAAGTATGATCTGG  300

seq1  TAAGAGAAGCCACCTTAAAGATTAGATATTGTACTTTTATGTTTTAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAGCCACCTTAAAGATTAGATATTGTACTTTTATGTTTTAATGT  350

seq1  ATTTTTGCTTCTTTGCATATTATTATCGCCTCTCAATGACCATTTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTTCTTTGCATATTATTATCGCCTCTCAATGACCATTTGTTGT  400

seq1  TTTGAAAATAAACTATAAGTGGAGAGAGAGTGGGGAGATTAGTTGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATAAACTATAAGTGGAGAGAGAGTGGGGAGATTAGTTGTTTCC  450

seq1  TTGTGGCAGAGCATGCTGTGGAATCAACTTGTCTGACCTCTGAAATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCAGAGCATGCTGTGGAATCAACTTGTCTGACCTCTGAAATACAA  500

seq1  CTTGAGCTACATTCCAGGCTGTCACCAGTTTTCCTGTCTGTCCTGTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTACATTCCAGGCTGTCACCAGTTTTCCTGTCTGTCCTGTGTGC  550

seq1  TGGTAACAATTGCC-TTTGATAAGATTCAGCCGACCAAGGCTTATTCATT  599
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTAACAATTGCCTTTTGATAAGATTCAGCCGACCAAGGCTTATTCATT  600

seq1  CTTCTGTGGGGCCAGTTCATTTGAAAGTGTGCTGATCCTACAGAAAAGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGGGCCAGTTCATTTGAAAGTGTGCTGATCCTACAGAAAAGGC  650

seq1  TCCCATTCTGGGACTGCCTCCTGGGGCTGCCTCCATTCTGCAGCTCTGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCTGGGACTGCCTCCTGGGGCTGCCTCCATTCTGCAGCTCTGGA  700

seq1  AAGGGTCTGCACAGAGCTCATAAATTGCCTGCCTCCTT-AAATCAACCAT  748
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGGTCTGCACAGAGCTCATAAATTGCCTGCCTCCTTAAAATCAACCAT  750

seq1  GCTGTAAGGCAGCACACACAACACATATTAGCGGGTCATGGCACCCATCT  798
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTGTAAGGCAGCACACACAACACATATTAGCGGGTCATGGCA-CCATCT  799

seq1  CAGGAGGCTGAGTGTGATAGAACTGCAAACTCAACCTACAAGGAACCTCC  848
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GAGGCTGAGTGTGATAGAACTGCAAACTCAACCTACAAGGAACCTCC  848

seq1  CTTGGTGGCTGTTCACTCCTAGTTTAATGCTTTTTCTCTTTCATAGCCTC  898
      |||||||||||| || |||||| ||||||||||||||||||  |||||| 
seq2  CTTGGTGGCTGTCCATTCCTAG-TTAATGCTTTTTCTCTTTTCTAGCCT-  896

seq1  CCCACATAGCTTCTTTGAGGAATTATGATGCTCCA-CCTGAAGAGGGAGG  947
      |||||||| ||||||||||||| ||||||||| || |||||||| |||||
seq2  CCCACATACCTTCTTTGAGGAA-TATGATGCTTCACCCTGAAGA-GGAGG  944

seq1  CTAGCCTATTAGGATAAAATGTGGGGTTTAGAGGCACAGAACCTGCAGCA  997
      ||| ||||||||||| ||||||| || ||| | ||  |||| ||||||||
seq2  CTATCCTATTAGGAT-AAATGTGTGGGTTATA-GCTAAGAA-CTGCAGCA  991

seq1  AGATCCCATTCTCTATTCTG  1017
      |||||| |||||||||||||
seq2  AGATCCTATTCTCTATTCTG  1011