BAC Information

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BAC

Clone NameB6Ng01-088I15
ChromosomeY (Build37)18 (Build37)
Map Location 573,455 - 573,51548,191,131 - 48,192,218
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I15.bB6Ng01-088I15.g
ACCDH901363DH901364
length1541,080
definitionDH901363|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I15, 5' end.DH901364|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,455 - 573,515)(48,191,131 - 48,192,218)
sequence
tttgtttagttctgtgccccatttttaatggggttatttgattttctgga
gtccatcttcttgagttctttatatatattggatattagtcccccattat
tgggaagagaagccccttggtcttgcaaactttatatgccccagtacagg
ggaa
gaattctttgttcagttctgagccccatttttaagggggttatttgattt
tctgaggtccaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttaggataggtaaagatcctttcccagtctgttggtggtctt
tttgtcttatagacagtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttagatttgaccttagtacaaggagataagtatggatcgagggaag
ggtttttctatagctagaaaaacataaaagccaattgcattaaaatctct
cgttagatgggttagaggaaacagccagttatagtgacaaattttggact
gataattggattacagaggagttgtaagtttaatgacagcagtagagtgt
gatcaagcaatgttcacttttttctccataactcagctgccgagtgcaca
tataccagagatcccttcgaactgccctgtgtagactctaaaataaaatt
aaaagagagatttaaaaacaaccaagaactctataagaatctcagctgtc
ttcttcagagaaaattgaaaatgtactctgaccctactaaaaatacaaaa
taaacaactgcagtccgaaataaactatccccatttgatgactacttatt
tccaaggagttcccggttgccagtccaagctggtgctatgatattcccat
acctgattaagagacaaacagtgtagtgttcctgtgatgagtgatgtgac
taatttcacagtcaccagcctatgtgctgcttagctgattcagaattacc
attgacatcagaagcatcagattggaacttgccagctgatatcactcact
tctgccgtatcctgtgtacaatgggttcctagtctagcggggccataatt
ccatgctgtgtaacacatttcatgcactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573455_573515
seq2: B6Ng01-088I15.b_143_203

seq1  CCATCATTGGGAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCA  50
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCATTATTGGGAAGAGAAGCCCCTTGGTCTTGCAAACTTTATATGCCCCA  50

seq1  GTACAGGGGAA  61
      |||||||||||
seq2  GTACAGGGGAA  61

seq1: chr18_48191131_48192218
seq2: B6Ng01-088I15.g_69_1148 (reverse)

seq1  TCAGTGCATAGAAATGTGTTACAAAACAGCATGGAAAATATGGCCCCGCT  50
      ||||||||| ||||||||||||   ||||||||| || ||||||||||||
seq2  TCAGTGCAT-GAAATGTGTTAC---ACAGCATGG-AATTATGGCCCCGCT  45

seq1  AGACCTAGGAAACCATTTGTACACAGGATAC-GCAGAAGTGAGTGATATC  99
      ||| ||||||| ||| ||||||||||||||| ||||||||||||||||||
seq2  AGA-CTAGGAACCCA-TTGTACACAGGATACGGCAGAAGTGAGTGATATC  93

seq1  AGCTGGCAAGTTCCAATCTGATGGCTTCTGATGTCAATGGTAATTCTGAA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTGGCAAGTTCCAATCTGAT-GCTTCTGATGTCAATGGTAATTCTGAA  142

seq1  TCAGCCTAAGCAGCACATAGGCTGGTGACTGTGAAATTAGTCAACATCAC  199
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCAG-CTAAGCAGCACATAGGCTGGTGACTGTGAAATTAGTC-ACATCAC  190

seq1  TCATCACAGGAACACTACACTGTTTGTCTCTTAATCAGGTATGGGAATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACAGGAACACTACACTGTTTGTCTCTTAATCAGGTATGGGAATAT  240

seq1  CATAGCACCAGCTTGGACTGGCAACC-GGAACTCCTTGGAAATAAGTAGT  298
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATAGCACCAGCTTGGACTGGCAACCGGGAACTCCTTGGAAATAAGTAGT  290

seq1  CATCAAATGGGGATAGTTTATTTCGGACTGCAGTTGTTTATTTTGTATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATGGGGATAGTTTATTTCGGACTGCAGTTGTTTATTTTGTATTT  340

seq1  TTAGTAGGGTCAGAGTACATTTTCAATTTTCTCTGAAGAAGACAGCTGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGGTCAGAGTACATTTTCAATTTTCTCTGAAGAAGACAGCTGAG  390

seq1  ATTCTTATAGAGTTCTTGGTTGTTTTTAAATCTCTCTTTTAATTTTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATAGAGTTCTTGGTTGTTTTTAAATCTCTCTTTTAATTTTATTT  440

seq1  TAGAGTCTACACAGGGCAGTTCGAAGGGATCTCTGGTATATGTGCACTCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTACACAGGGCAGTTCGAAGGGATCTCTGGTATATGTGCACTCG  490

seq1  GCAGCTGAGTTATGGAGAAAAAAGTGAACATTGCTTGATCACACTCTACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGAGTTATGGAGAAAAAAGTGAACATTGCTTGATCACACTCTACT  540

seq1  GCTGTCATTAAACTTACAACTCCTCTGTAATCCAATTATCAGTCCAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATTAAACTTACAACTCCTCTGTAATCCAATTATCAGTCCAAAAT  590

seq1  TTGTCACTATAACTGGCTGTTTCCTCTAACCCATCTAACGAGAGATTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTATAACTGGCTGTTTCCTCTAACCCATCTAACGAGAGATTTTA  640

seq1  ATGCAATTGGCTTTTATGTTTTTCTAGCTATAGAAAAACCCTTCCCTCGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTGGCTTTTATGTTTTTCTAGCTATAGAAAAACCCTTCCCTCGA  690

seq1  TCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAAC  740

seq1  TTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAA  790

seq1  AGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAAT  840

seq1  GGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCC  890

seq1  AAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCA  940

seq1  ACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAAT  990

seq1  ATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATA  1040

seq1  ACCCCCTTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1080