BAC Information

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BAC

Clone NameB6Ng01-095D22
ChromosomeY (Build37)Y (Build37)
Map Location 263,894 - 265,0651,120,586 - 1,121,069
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D22.bB6Ng01-095D22.g
ACCDH906238DH906239
length1,145801
definitionDH906238|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D22, 5' end.DH906239|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(263,894 - 265,065)(1,120,586 - 1,121,069)
sequence
gaattccaaatgggtatatacaacatacaaatttttacaacaaggattct
attttagcctacacagattttatttttttggttatttatttttatatagt
cacttacttttgtctgcttttttactccctcttttattcttgaaaagctc
atgacatcccagggtctggcatttgctgggcaaacattctaccactgaac
taagttcccaatcacttttgcttgcttttctaacatacctgtcctctgag
ttactgatcagtccaagaacttgggaaatacaagcctctgcttcagttag
gcatttcttcaatcgctgaagcagctcactattaggaaatcgtctatcac
gagcctcagattccaatgctcttagctcttcaaaaccttaaaaaaaaaaa
aaaaaaaagagtcaaagttccaatagagtgttaccagaagatagttttct
agaatattgaagaaagtaagtcaataataaacaaataactgatcatagct
taaaggttcttcaatttttattacttactccgtttccgaccatcctccac
ctctagggctgcttgtactttgttggcccagttgtcaaatgactcagctc
gaatcttcagcttttgtagcatagcaggcagttcatccaatgtgtacctg
tacctagaggaagaacaagaaaagaatatatgggccatatctgtatttcc
tctatctctttcatgtaagacccatactcaccgtaagtactgtcgattcc
ttgagcacttgcacagatcattgatatgggaaaggcagacaagactatct
ggacagtcataacaggccaaggctgataggaaacacgtggtcttacactt
gatgcactgacgctcatcatctgggagtagctcaaaagcctctcgctcag
cttccgtgatgccctgggggtgtcaacccacatatactgtaaagactaga
gcagtgtctgacaccccaccacagcaatactgagcctgctgtggctagct
gtaagatagctgtagagaaatgagaatccataacactagtctttgcccta
catttccatagcatgataagagaagcatacaggctaactcaaaattggct
gtgttcctaacatatggttaactggatatccttaagcgttggttt
gaattctttttttttaatgtttttattaggtattttcctcatttacattt
ccaatgctatcccaaaagtcccccataccctcccccctcccactccccta
cccacctactcccactttttggccctagtgttcccctgtactgggccata
taaagtttgcaagtccaatgggcctctctttacagtgatggccgactagg
ccatcttttgatacatatgcagctagagtcaagagctccggggtactggt
tagttcataatgttgttccacctatagggtcgcagatccctttagctcct
tgggtactttctctagctcctccattgggggccctgtgatccatccaata
gctgactgtgagcatacttctgtgtttgctaggccccggcatagtctcat
aagagagagctatatctgggtcctttcagcaaaatcttgctagtgtgtgc
aatggtgtcagtgtttggaagctgattatgtgatggatcttgaatagcca
agacacacttaaagaattgttcaaaaaagtccttaatcatcaaggaaatg
caaatcaaaactctgaggttccattttacactgatcacaatggctaagat
caaaaactcaagtgacaacacatgatggtgttgtgggatgtggagcaagg
ggaacactcctctggttctgggggcggggggagtgtaaaatgcaacaacc
actttgaaaatcaattcagaaagctggagataattctacctcaaaaccca
gctataccactcctgggcatataaacaaaagatgctccatcatcccacaa
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_263894_265065
seq2: B6Ng01-095D22.b_45_1189 (reverse)

seq1  AAACCAACGC-TAAGGACTCATCAAGTATACACTATGTTAGAGACACAGA  49
      |||||||||| ||||||   ||| |||  ||  ||||||||  |||||| 
seq2  AAACCAACGCTTAAGGA--TATCCAGTTAACCATATGTTAGGAACACAG-  47

seq1  CAAATATTGAGTAAGCACTGTATGCCTTCTCTTAATTCATGCTATTGGAA  99
      | ||| |||||| ||| ||||||| |||||||||  |||||||| |||||
seq2  CCAATTTTGAGTTAGC-CTGTATG-CTTCTCTTA--TCATGCTA-TGGAA  92

seq1  ATGTAAGGGCAAAGACTATGTGTTTATGTGTTTTTCTTCCAATTTCTCTA  149
      |||| ||||||||||||| ||| ||||| | || ||     |||||||||
seq2  ATGT-AGGGCAAAGACTA-GTG-TTATG-GATTCTC-----ATTTCTCTA  133

seq1  CAGCTATCCTTACAAGCTTAAGCCCACAGCAGGGCTCAGTATTGGCTGTG  199
      ||||||| ||||| ||||  || |||||||| ||||||||||| ||||||
seq2  CAGCTAT-CTTAC-AGCT--AG-CCACAGCA-GGCTCAGTATT-GCTGTG  176

seq1  GTGGGGTGTCCAGAACACTGCTCCTAGTCTTTACAGTATATGTGGGTTGA  249
      ||||||||| ||| |||||||| |||||||||||||||||||||||||| 
seq2  GTGGGGTGT-CAG-ACACTGCT-CTAGTCTTTACAGTATATGTGGGTTG-  222

seq1  ACACCCCCAGGGCATCACGGAAGCTGAGCGAGAGGCTTTTGAGCTACTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCAGGGCATCACGGAAGCTGAGCGAGAGGCTTTTGAGCTACTCC  272

seq1  CAGATGATGAGCGTCAGTGCATCAAGTGTAAGACCACGTGTTTCCTATCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATGAGCGTCAGTGCATCAAGTGTAAGACCACGTGTTTCCTATCA  322

seq1  GCCTTGGCCTGTTATGACTGTCCAGATAGTCTTGTCTGCCTTTCCCATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGCCTGTTATGACTGTCCAGATAGTCTTGTCTGCCTTTCCCATAT  372

seq1  CAATGATCTGTGCAAGTGCTCAAGGAATCGACAGTACTTACGGTGAGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATCTGTGCAAGTGCTCAAGGAATCGACAGTACTTACGGTGAGTAT  422

seq1  GGGTCTTACATGAAAGAGATAGAGGAAATACAGATATGGCCCATATATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTACATGAAAGAGATAGAGGAAATACAGATATGGCCCATATATTC  472

seq1  TTTTCTTGTTCTTCCTCTAGGTACAGGTACACATTGGATGAACTGCCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTCTTCCTCTAGGTACAGGTACACATTGGATGAACTGCCTGC  522

seq1  TATGCTACAAAAGCTGAAGATTCGAGCTGAGTCATTTGACAACTGGGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTACAAAAGCTGAAGATTCGAGCTGAGTCATTTGACAACTGGGCCA  572

seq1  ACAAAGTACAAGCAGCCCTAGAGGTGGAGGATGGTCGGAAACGGAGTAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTACAAGCAGCCCTAGAGGTGGAGGATGGTCGGAAACGGAGTAAG  622

seq1  TAATAAAAATTGAAGAACCTTTAAGCTATGATCAGTTATTTGTTTATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATTGAAGAACCTTTAAGCTATGATCAGTTATTTGTTTATTAT  672

seq1  TGACTTACTTTCTTCAATATTCTAGAAAACTATCTTCTGGTAACACTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACTTTCTTCAATATTCTAGAAAACTATCTTCTGGTAACACTCTA  722

seq1  TTGGAACTTTGACTCTTTTTTTTTTTTTTTTTTTAAGGTTTTGAAGAGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTTTGACTCTTTTTTTTTTTTTTTTTTTAAGGTTTTGAAGAGCT  772

seq1  AAGAGCATTGGAATCTGAGGCTCGTGATAGACGATTTCCTAATAGTGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTGGAATCTGAGGCTCGTGATAGACGATTTCCTAATAGTGAGC  822

seq1  TGCTTCAGCGATTGAAGAAATGCCTAACTGAAGCAGAGGCTTGTATTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGCGATTGAAGAAATGCCTAACTGAAGCAGAGGCTTGTATTTCC  872

seq1  CAAGTTCTTGGACTGATCAGTAACTCAGAGGACAGGTATGTTAGAAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCTTGGACTGATCAGTAACTCAGAGGACAGGTATGTTAGAAAAGC  922

seq1  AAGCAAAAGTGATTGGGAACTTAGTTCAGTGGTAGAATGTTTGCCCAGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAGTGATTGGGAACTTAGTTCAGTGGTAGAATGTTTGCCCAGCA  972

seq1  AATGCCAGACCCTGGGATGTCATGAGCTTTTCAAGAATAAAAGAGGGAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGACCCTGGGATGTCATGAGCTTTTCAAGAATAAAAGAGGGAGT  1022

seq1  AAAAAAGCAGACAAAAGTAAGTGACTATATAAAAATAAATAACCAAAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAGACAAAAGTAAGTGACTATATAAAAATAAATAACCAAAAAA  1072

seq1  ATAAAATCTGTGTAGGCTAAAATAGAATCCTTGTTGTAAAAATTTGTATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATCTGTGTAGGCTAAAATAGAATCCTTGTTGTAAAAATTTGTATG  1122

seq1  TTGTATATACCCATTTGGAATTC  1172
      |||||||||||||||||||||||
seq2  TTGTATATACCCATTTGGAATTC  1145

seq1: chrY_1120586_1121069
seq2: B6Ng01-095D22.g_74_556

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      |||||||||    ||||||||||||||||  |||||||||||||||||||
seq2  TTTTTTTTTAATGTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACC-CCCACTCCCCTGCCCACC  99
      |||| |||||||||||||||| || ||| || ||||||||||| ||||||
seq2  CTATCCCAAAAGTCCCCCATACCCTCCCCCCTCCCACTCCCCTACCCACC  100

seq1  CACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGT  149
       |||||| |||||||||||| || ||||||||||||||| ||||||||||
seq2  TACTCCCACTTTTTGGCCCTAGTGTTCCCCTGTACTGGGCCATATAAAGT  150

seq1  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGCAAGTCCAATGGGCCTCTCTTTACAGTGATGGCCGACTAGGCCATCT  200

seq1  TTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTC  249
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTC  250

seq1  ATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTA  299
      |||| ||||||||||||||||||| | |||||||||||||||||||| ||
seq2  ATAATGTTGTTCCACCTATAGGGTCGCAGATCCCTTTAGCTCCTTGGGTA  300

seq1  CTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGAC  349
      ||||||||||||||||||||||| ||||| ||||||||||| ||||||||
seq2  CTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGAC  350

seq1  TGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGA  399
      |||||||||  ||||||||||||||| |||||||||||||||||| ||||
seq2  TGTGAGCAT--ACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCATAAGA  398

seq1  GACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATG  449
      || ||||| |||||  ||||||||  |||||||||||||||| |||||||
seq2  GAGAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTGTGCAATG  448

seq1  GTGTCAGCGTTTGGATGCTGATTATGGGGTGGATC  484
      ||||||| ||||||| |||||||||| | ||||||
seq2  GTGTCAGTGTTTGGAAGCTGATTATGTGATGGATC  483