BAC Information

Click to search

BAC

Clone NameB6Ng01-098H24
ChromosomeY (Build37)7 (Build37)
Map Location 1,120,575 - 1,120,746113,880,011 - 113,880,852
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098H24.bB6Ng01-098H24.g
ACCDH908575DH908576
length5361,093
definitionDH908575|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H24, 5' end.DH908576|Mus musculus domesticus DNA, BAC clone: B6Ng01-098H24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,575 - 1,120,746)(113,880,011 - 113,880,852)
sequence
gaattctgcactaaacctatctgttcctgggcttattttggttgggagac
ttttaatgtctgattctatttccttaggggttataggactatttagatgg
tttatctgatcctgatttaactttggtacctggtatctgcctaggaaatc
atccatttcatctagattttccagtattgttgagtataggcttttgtagt
aggatctgacaaggaatttcctcagtttttattgttatgtctcacttttc
atttctgacttttcaatttgaatactgcctctgtgctctccagttagttt
ggctaagggtttgtctatgttgttgattttctctttttttttattttttc
catttttattaggtatttagctcatttacatttccaatgctataccaaaa
gtcccccatacccacccacccccactcccctacccacccactcccccttt
ttggccctggcgttcccctgtactggggcatataaagtttgcatgtccaa
tgggcctctctttccagtgatggccgactaggccat
gaattcaacaaaaggctcagaggttaaatctcactaatatattacatgac
acagaagggagaaatttagatatcgaagacaaagcagaatacatggatag
ctcatccaaaaatatattaaatctaaaaatatcctggcacaaaatgttca
ggaaatttatgacacataaaaagactatgaataatgtatatagacaaagg
agaagaaacccagttctaaggtacataaattggttttaacaaaataatag
aataaaataccttcttggttaatggtaggactttccctctcccagtgctg
tgagcatatctggctttaacctgtgtagatcttggacatgctgccacagt
ttgtgttagtttatacatacatcatttttcctgttgtatctggaagacac
catttgcttggagtcatgcatcgcctctgactctacattcttgccccctc
ttcttctacatagatccctgagtcttgagggtaaggtttaattgagacac
cccttttagagctaagtgtttcagttcatcttactttcttcacattgtcc
aaatttgtgtgtctatgttaattcccatctacttcaaaaaggagcatctc
tgatgtgtgttgagaaaggcagtatgttattgggagtccaaataattttg
tcaacatgttcatggttattagatcatccataggagcgtggctaagttac
cagtggacaaattcacaaatagtaatggctttctccctacagaagcaatc
aacagttttaaattgtcaagaaaacaaggcatattgttatttattttatt
tttcagatttcaaatgttatcaattatagatggtgactcatgagttcctt
ttccatccttttgaaaccttggcagtcttaatcttctcagacattacaca
gaaataccatagcttctgtgacttcatgggtacaatggttttaacagacc
cagagttatcagtaaatccccagtggcagtcaacatagcactctgtacac
tgtcttgatacccttaaggtaagccttactgttgaagtcatacccctctg
catgcagtacatttagggaatcaatcaaaaactgactgggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120575_1120746
seq2: B6Ng01-098H24.b_380_546

seq1  TTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTA  50
      ||||||||||    ||||||||| ||||||||||||||||| ||||||||
seq2  TTTTTTTTTA----TTTTTTCCA-TTTTTATTAGGTATTTAGCTCATTTA  45

seq1  CATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCC  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCC  95

seq1  CCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGG  150
      ||| ||||||||||||||||||||||||||||  ||||||||||||||||
seq2  CCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGG  145

seq1  CATATAAAGTTTGCAAGTCCAA  172
      ||||||||||||||| ||||||
seq2  CATATAAAGTTTGCATGTCCAA  167

seq1: chr7_113880011_113880852
seq2: B6Ng01-098H24.g_321_1159

seq1  AAATACCTTCTTGGTTAATGGTAGGACTTTCCCTCTCCCAGTGCTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTTCTTGGTTAATGGTAGGACTTTCCCTCTCCCAGTGCTGTGAG  50

seq1  CATATCTGGCTTTAACCTGTGTAGATCTTGGACATGCTGCCACAGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGGCTTTAACCTGTGTAGATCTTGGACATGCTGCCACAGTTTGT  100

seq1  GTTAGTTTATACATACATCATTTTTCCTGTTGTATCTGGAAGACACCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTATACATACATCATTTTTCCTGTTGTATCTGGAAGACACCATT  150

seq1  TGCTTGGAGTCATGCATCGCCTCTGACTCTACATTCTTGCCCCCTCTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAGTCATGCATCGCCTCTGACTCTACATTCTTGCCCCCTCTTCT  200

seq1  TCTACATAGATCCCTGAGTCTTGAGGGTAAGGTTTAATTGAGACACCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAGATCCCTGAGTCTTGAGGGTAAGGTTTAATTGAGACACCCCT  250

seq1  TTTAGAGCTAAGTGTTTCAGTTCATCTTACTTTCTTCACATTGTCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTAAGTGTTTCAGTTCATCTTACTTTCTTCACATTGTCCAAAT  300

seq1  TTGTGTGTCTATGTTAATTCCCATCTACTTCAAAAAGGAGCATCTCTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTCTATGTTAATTCCCATCTACTTCAAAAAGGAGCATCTCTGAT  350

seq1  GTGTGTTGAGAAAGGCAGTATGTTATTGGGAGTCCAAATAATTTTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTGAGAAAGGCAGTATGTTATTGGGAGTCCAAATAATTTTGTCAA  400

seq1  CATGTTCATGGTTATTAGATCATCCATAGGAGCGTGGCTAAGTTACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCATGGTTATTAGATCATCCATAGGAGCGTGGCTAAGTTACCAGT  450

seq1  GGACAAATTCACAAATAGTAATGGCTTTCTCCCTACAGAAGCAATCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATTCACAAATAGTAATGGCTTTCTCCCTACAGAAGCAATCAACA  500

seq1  GTTTTAAATTGTCAAGAAAACAAGGCATATTGTTATTTATTTTATTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTGTCAAGAAAACAAGGCATATTGTTATTTATTTTATTTTTC  550

seq1  AGATTTCAAATGTTATCAATTATAGATGGTGACTCATGAGTTCCTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAAATGTTATCAATTATAGATGGTGACTCATGAGTTCCTTTTCC  600

seq1  ATCCTTTTGAAACCTTGGCAGTCTTAATCTTCTCAGACATTACACAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTGAAACCTTGGCAGTCTTAATCTTCTCAGACATTACACAGAAA  650

seq1  TACCATAGCTTCTGTGACTTCATGGGTACAATGGTTTTAACAGACCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATAGCTTCTGTGACTTCATGGGTACAATGGTTTTAACAGACCCAGA  700

seq1  GTTATCAGTAAATCCCCAGTGGCAGTCAACATAGCACTCTGTACACTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTATCAGTAAATCCCCAGTGGCAGTCAACATAGCACTCTGTACACTGT-  749

seq1  CTTGATAACCCTAAGGTAAGCCCTTACTGTTGAAGTCAATACACACTCTG  800
      ||||||| || ||||||||| |||||||||||||||| |||| | |||||
seq2  CTTGATACCCTTAAGGTAAG-CCTTACTGTTGAAGTC-ATAC-CCCTCTG  796

seq1  CATGCAGTACATATA-GGAATCAATCAAAAACTGACTGGGAAT  842
      |||||||||||| || |||||||||||||||||||||||||||
seq2  CATGCAGTACATTTAGGGAATCAATCAAAAACTGACTGGGAAT  839