BAC Information

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BAC

Clone NameB6Ng01-098I22
ChromosomeY (Build37)10 (Build37)
Map Location 1,870,383 - 1,870,56934,938,987 - 34,940,084
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I22.bB6Ng01-098I22.g
ACCDH908615DH908616
length1931,096
definitionDH908615|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I22, 5' end.DH908616|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,383 - 1,870,569)(34,938,987 - 34,940,084)
sequence
aaggttccctataggtggaacaacattatgaactaaccagtacctcggag
ctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatca
ctggaaagagaggcccattggacatgcaaactttatatgccccagtacag
gggaacgccagggccaaaaagggggagtgggtgggtaggggag
gaattcctaaatgtttctttaatgtctttaaatgtctgcatctttttttt
tttaatcagagacttacctgagctcagcagcttagcctatagaacctaag
aatagaagtgctctctcaatagaaacactttatgaatttatactgatcct
tctgaaaaaataaagttaccacaccacacctgtacttccttcctaacaca
atccaatatccctaaacaacttctgaggaaagatgtttataagtcagaaa
tgttttctcttatggctgagatgggagttaggaactaaattctattactc
attggaggaaacaaaggaaaggacagaaatgagcagtattatcttccttc
taattgatttagaaaaaaagccataatcctgttagtgtaatcagcacagg
gcacaccttccttcagaagatgtagatctccaactatgcttgcaccaaat
ttaataatcatatcacagggataaatgaacaagggtacatgtgagcaaaa
acctaaaacaaatacaggaaatgagctataattggcatgagtcagcatat
tttttcattttctattccattataaataatatataaaacaactaacatga
aacttttcagtggaagaaaattgaaaggaaaaattaggaatggatatttt
ttatttttattatagattaaaatttaagtaaactcttttgatatactcat
gtactttatctatgaagacatttaattatgttagttatatgaatttcaaa
catcatacatttgcctattgctgcacagactccatatctaaggtatcaaa
ttttgtttaatattgcagagacaagagccacttcagctcagacattgaag
ccttgcatatagagttgacctaatatatatatcctgaccactgtattatt
gatagtggtcaactgtcaatctaaatatatccagctcttctgtcaatatc
ctgaccactgaatgataaccaccatcagatgggttaacaaaccatacttc
ctatttaaatagtacttcttgaagtaaaattgaatcaatgaataaattaa
ttatttttaataacattatgtttcttggtcagttaaaatatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870383_1870569
seq2: B6Ng01-098I22.b_60_246

seq1  CCCTATAGGTGGAACAACATTATGAACTAACCATTACCCCTGAGCTCTTG  50
      ||||||||||||||||||||||||||||||||| |||| | |||||||||
seq2  CCCTATAGGTGGAACAACATTATGAACTAACCAGTACCTCGGAGCTCTTG  50

seq1  ACTCTTGCTGCATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAA  100
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAA  100

seq1  AGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCCCATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAAC  150

seq1  GCCAGGGCCAAAAAGGGGCAGTGGGTGGGTAGGGGAG  187
      |||||||||||||||||| ||||||||||||||||||
seq2  GCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAG  187

seq1: chr10_34938987_34940084
seq2: B6Ng01-098I22.g_65_1160

seq1  GAATTCCTAAATGTTTCTTTAATGTCTTTAAATGTCTGCATCTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATGTTTCTTTAATGTCTTTAAATGTCTGCATCTTTTTTTT  50

seq1  TTTAATCAGAGACTTACCTGAGCTCAGCAGCTTAGCCTATAGAACCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAGAGACTTACCTGAGCTCAGCAGCTTAGCCTATAGAACCTAAG  100

seq1  AATAGAAGTGCTCTCTCAATAGAAACACTTTATGAATTTATACTGATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGTGCTCTCTCAATAGAAACACTTTATGAATTTATACTGATCCT  150

seq1  TCTGAAAAAATAAAGTTACCACACCACACCTGTACTTCCTTCCTAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAAATAAAGTTACCACACCACACCTGTACTTCCTTCCTAACACA  200

seq1  ATCCAATATCCCTAAACAACTTCTGAGGAAAGATGTTTATAAGTCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATATCCCTAAACAACTTCTGAGGAAAGATGTTTATAAGTCAGAAA  250

seq1  TGTTTTCTCTTATGGCTGAGATGGGAGTTAGGAACTAAATTCTATTACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTTATGGCTGAGATGGGAGTTAGGAACTAAATTCTATTACTC  300

seq1  ATTGGAGGAAACAAAGGAAAGGACAGAAATGAGCAGTATTATCTTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGAAACAAAGGAAAGGACAGAAATGAGCAGTATTATCTTCCTTC  350

seq1  TAATTGATTTAGAAAAAAAGCCATAATCCTGTTAGTGTAATCAGCACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATTTAGAAAAAAAGCCATAATCCTGTTAGTGTAATCAGCACAGG  400

seq1  GCACACCTTCCTTCAGAAGATGTAGATCTCCAACTATGCTTGCACCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTTCCTTCAGAAGATGTAGATCTCCAACTATGCTTGCACCAAAT  450

seq1  TTAATAATCATATCACAGGGATAAATGAACAAGGGTACATGTGAGCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCATATCACAGGGATAAATGAACAAGGGTACATGTGAGCAAAA  500

seq1  ACCTAAAACAAATACAGGAAATGAGCTATAATTGGCATGAGTCAGCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAACAAATACAGGAAATGAGCTATAATTGGCATGAGTCAGCATAT  550

seq1  TTTTTCATTTTCTATTCCATTATAAATAATATATAAAACAACTAACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTTCTATTCCATTATAAATAATATATAAAACAACTAACATGA  600

seq1  AACTTTTCAGTGGAAGAAAATTGAAAGGAAAAATTAGGAATGGATATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCAGTGGAAGAAAATTGAAAGGAAAAATTAGGAATGGATATTTT  650

seq1  TTATTTTTATTATAGATTAAAATTTAAGTAAACTCTTTTGATATACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTATAGATTAAAATTTAAGTAAACTCTTTTGATATACTCAT  700

seq1  GTACTTTATCTATGAAGACATTTAATTATGTTAGTTATATGAATTTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTATCTATGAAGACATTTAATTATGTTAGTTATATGAATTTCAAA  750

seq1  CATCATACATTTGCCTATTGCTGCACAGACTCCATATCTAAGGTATCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATACATTTGCCTATTGCTGCACAGACTCCATATCTAAGGTATCAAA  800

seq1  TTTTGTTTAATATTGCAGAGACAAGAGCCACTTCAGCTCAGACATTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTAATATTGCAGAGACAAGAGCCACTTCAGCTCAGACATTGAAG  850

seq1  CCTTGCATATAGAGTTGACCTAATATATATATCCTGACCACTGTATTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCATATAGAGTTGACCTAATATATATATCCTGACCACTGTATTATT  900

seq1  GATAGTGGTCAACTGTCAATCTAAATATATCCAGCCCTTCTGTCAATATC  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GATAGTGGTCAACTGTCAATCTAAATATATCCAGCTCTTCTGTCAATATC  950

seq1  CTGACCACTGAATGATAACCACCATCAAGAT-GGTTAACAAACCATACTT  999
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  CTGACCACTGAATGATAACCACCATC-AGATGGGTTAACAAACCATACTT  999

seq1  CCTATTTACATAAGTACTTCTTGAAGTAAAATTGAATCAAATGATAAATT  1049
      |||||||| || ||||||||||||||||||||||||||||   |||||||
seq2  CCTATTTAAAT-AGTACTTCTTGAAGTAAAATTGAATCAATGAATAAATT  1048

seq1  TATTATTTTTAATATCATTATGTTTCTTGTTCAGTTTTAAATATTTATT  1098
       ||||||||||||| |||||||||||||| |||| || |||||||||||
seq2  AATTATTTTTAATAACATTATGTTTCTTGGTCAG-TTAAAATATTTATT  1096