BAC Information

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BAC

Clone NameB6Ng01-099D05
Chromosome8 (Build37)Y (Build37)
Map Location 38,944,915 - 38,945,4041,870,346 - 1,870,573
singlet/doubletsingletsinglet
Overlap geneSgcz
Upstream geneA730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121, LOC621149
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D05.bB6Ng01-099D05.g
ACCDH909061DH909062
length484491
definitionDH909061|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D05, 5' end.DH909062|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,944,915 - 38,945,404)(1,870,346 - 1,870,573)
sequence
acaagagattgagggcacattggaggaatttggtggatgatgttgaaagt
gatgtaagtgtatttcactcatgtatggaattctcaaacaatacaaaatt
taaaatatgaaattttgattacattagagctacgaggttgggaatcaatg
gaataaaaattctagccggtgggaacactaagtggcacagccattttaga
agacagtttggcagtttcttaaaaagccaagtgcaagtatctgcatctgt
cttaggtgctggcagagcacccatgactaagctaccaactcaagagcata
cctgggctagtccgtagctcccactaaatatgtagcattatctggcctca
gtgggaggagatgtgcttggttctctggaggtttgacttcccagagaagg
gagctatagaggggggaagtgagagtgggttggtaggggagcacccgctt
agaggtaaggggaaggagagagggggtggaggtt
tttgttcagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctttttgt
cctattagattatgctgaaaggaccctgatatagctgtctcttgtcagag
tatgcctgggcctagcaaacatagaagtggatgctcacagtcggctattg
gatggatcacatggcccccaatgaaggagctagagaaagtaccaaagaag
ctaaagggatctgcaaccctataggtggaacaacattatgaactaaccag
taccccggagctcttgactctagctgcatatgcatcaaaagatggcctag
tcggccatcactggaaagagaggcccattggacacgcaaactttatatgc
cccagtacaggggaacgccagggccataaaaggggagtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_38944915_38945404
seq2: B6Ng01-099D05.b_42_531

seq1  GAATTCACAAGAGATTGAGGGCACATTGGAGGAATTTGGTGGATGATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGAGATTGAGGGCACATTGGAGGAATTTGGTGGATGATGTT  50

seq1  GAAAGTGATGTAAGTGTATTTCACTCATGTATGGAATTCTCAAACAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGATGTAAGTGTATTTCACTCATGTATGGAATTCTCAAACAATAC  100

seq1  AAAATTTAAAATATGAAATTTTGATTACATTAGAGCTACGAGGTTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAATATGAAATTTTGATTACATTAGAGCTACGAGGTTGGGAA  150

seq1  TCAATGGAATAAAAATTCTAGCCGGTGGGAACACTAAGTGGCACAGCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGGAATAAAAATTCTAGCCGGTGGGAACACTAAGTGGCACAGCCAT  200

seq1  TTTAGAAGACAGTTTGGCAGTTTCTTAAAAAGCCAAGTGCAAGTATCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGACAGTTTGGCAGTTTCTTAAAAAGCCAAGTGCAAGTATCTGC  250

seq1  ATCTGTCTTAGGTGCTGGCAGAGCACCCATGACTAAGCTACCAACTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTAGGTGCTGGCAGAGCACCCATGACTAAGCTACCAACTCAAG  300

seq1  AGCATACCTGGGCTAGTCCGTAGCTCCCACTAAATATGTAGCATTATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACCTGGGCTAGTCCGTAGCTCCCACTAAATATGTAGCATTATCTG  350

seq1  GCCTCAGTGGGAGGAGATGTGCTTGGTTCTCTGGAGGTTTGACTTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTGGGAGGAGATGTGCTTGGTTCTCTGGAGGTTTGACTTCCCAG  400

seq1  AGAAGGGAGCTATAGAGGGGGGAAGTGAGAGTGGGTTGGTAGGGGAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAGCTATAGAGGGGGGAAGTGAGAGTGGGTTGGTAGGGGAGCAC  450

seq1  CCCCTTAGAGGTAAAGGGAAGGAGAGAGGGGGTGGAGGTT  490
      || ||||||||||| |||||||||||||||||||||||||
seq2  CCGCTTAGAGGTAAGGGGAAGGAGAGAGGGGGTGGAGGTT  490

seq1: chrY_1870346_1870573
seq2: B6Ng01-099D05.g_353_564

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCAAAGAAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCATAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGG  228
      | ||| ||||||                
seq2  AAGGGGAGTGGG----------------  212