BAC Information

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BAC

Clone NameB6Ng01-099D20
ChromosomeY (Build37)19 (Build37)
Map Location 2,430,655 - 2,430,6979,586,541 - 9,587,628
singlet/doubletsingletsinglet
Overlap geneLOC676356
Upstream geneUbe1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581
Downstream geneLOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D20.bB6Ng01-099D20.g
ACCDH909088DH909089
length1,0661,142
definitionDH909088|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D20, 5' end.DH909089|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(2,430,655 - 2,430,697)(9,586,541 - 9,587,628)
sequence
gaattctgtctaaaaatttctctctgtctctctgtttctgtctctgtctc
cctctctctctctctttagcacttatacatctttcagaatacttgatcac
atggtaaaaatcttcaccacaagtttacacataaattcaaatcataaatt
gaataagaagtttacaactgggaatggttatatgcatatctactaagaga
aattatttgactaaatgttcatcatgtgtcaccagatctacagattcaag
gagggctaaaaactcataatttttgtgagtaaggtattaatgaggttttg
tatagataagcccagtcaatattttatcttcagttcttgcacctgtagta
aattgttagttctcttcttatgacgtttggttaataattttacaatctct
tggaatgtactctaacttgtagatacctgtatgctatctcagaagcagtt
aactcttgacacttaaagactgacagagttctcaatgtagttttgatatc
agaaagatcttaatagtaatcttttaaaaagagcttaataattactaaca
taattttgggaattcttataggatcattgttaagaattaagaaaccagag
cttgtgccctgatcagaccttgggctgggagatggctctacatccagtcc
aacaatacccaggggaagctcgactcccaggtgctctaacacacccagga
ttacaggatctcaggagcttggtcacatcaggatttcaggatcccagagg
cagcttgactctcaggatctcaggatcataggatcataggatcacagaat
cacagaatcacaggatcacagaggcagctatattctgaggagttctgaca
caaccaggatcacaggaaggacaggttccaatcagacatagccaagacag
gtagcactagagataaccagatggcaggaggcaagtatagaacataagca
cagaaaccaagttatttggcatcaccagaattcaattcttcttaccatag
caagtcctggatacctccacacactggaaaagcaagattcagatctaaaa
tacttctcatgatgat
gaattcagtgagaaggttatctattcagtaacattcaaatttacttctag
tagagacactgaaactaattaggcattacaaagaacggagtccgcatagc
tcagggctgggctgcagagtgtttacttgagacaatacccagtcttaccc
agataagggaattcacaatggcctagggtttactatgagattcagggaat
ccccctgagacggttttttcactaggcccaaagaaacagcataaatcagg
cacttactaagaacccctggtagtgggcttaacaatagattagcattaca
cctggctcccttcttagaggtaaacagcagcacctggtcccttgccatct
ttctttctttctttctttctttctttctttctttctttcttcatctttct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
ctttcttccttccttccttccttccttcctttctttctttctttctttct
ttctttctttctttctttctttctttcttttttctgaacatcatttattt
caaaatgactatgagggctggtatgtggcagaatgcttacctagtgtgaa
taaggccaccaccacaaaaatctaaaacccaaaccaaatgatagttgaag
tgtttctttaaagaaccttttaaaatgtccaaattcttgcatattttcta
tatttcttaatttttgttttattttgtctgttgcttaaggtttgtatagt
aacttcaatataagcagatttcagttaggaaagggaaaaagaggtaccca
gggttcttcatcagcatcagtgaagaactgggatagccaggcctctagcc
tccctgccatctttcgatgtatacatttccttatgttttgtgtcactgta
actaggcagatgtatctcgcctggtttcttgttattcttctgtataaaaa
ttttgatgcttgacttgtcaaattacattcagatttctacacaatctcct
gtgttgcgtttgtctttcattcattcgccgattccttgtccacctataac
caagaaactcgtttctacgcagtcaagggaccaaggaggctgccgccacc
caatgcacagagggctgtggaaaagatttcactcctggttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_2430655_2430697
seq2: B6Ng01-099D20.b_64_112

seq1  --TCTCTCTCTCTC----TCTCTCTCTTTCTCCCTCTCTCTCTCTCTTT  43
        ||||| ||||||    ||| ||||| |||||||||||||||||||||
seq2  TCTCTCTGTCTCTCTGTTTCTGTCTCTGTCTCCCTCTCTCTCTCTCTTT  49

seq1: chr19_9586541_9587628
seq2: B6Ng01-099D20.g_118_1209

seq1  TAGAGACACTGAAACTAATTAGGCATTACAAAGAACGGAGTCCGCATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACTGAAACTAATTAGGCATTACAAAGAACGGAGTCCGCATAGC  50

seq1  TCAGGGCTGGGCTGCAGAGTGTTTACTTGAGACAATACCCAGTCTTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTGGGCTGCAGAGTGTTTACTTGAGACAATACCCAGTCTTACCC  100

seq1  AGATAAGGGAATTCACAATGGCCTAGGGTTTACTATGAGATTCAGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGGAATTCACAATGGCCTAGGGTTTACTATGAGATTCAGGGAAT  150

seq1  CCCCCTGAGACGGTTTTTTCACTAGGCCCAAAGAAACAGCATAAATCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGAGACGGTTTTTTCACTAGGCCCAAAGAAACAGCATAAATCAGG  200

seq1  CACTTACTAAGAACCCCTGGTAGTGGGCTTAACAATAGATTAGCATTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACTAAGAACCCCTGGTAGTGGGCTTAACAATAGATTAGCATTACA  250

seq1  CCTGGCTCCCTTCTTAGAGGTAAACAGCAGCACCTGGTCCCTTGCCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCCCTTCTTAGAGGTAAACAGCAGCACCTGGTCCCTTGCCATCT  300

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCATCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCATCTTTCT  350

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  400

seq1  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCT  450

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTGAACATCATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTCTGAACATCATTTATTT  500

seq1  CAAAATGACTATGAGGGCTGGTATGTGGCAGAATGCTTACCTAGTGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGACTATGAGGGCTGGTATGTGGCAGAATGCTTACCTAGTGTGAA  550

seq1  TAAGGCCACCACCACAAAAATCTAAAACCCAAACCAAATGATAGTTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCACCACCACAAAAATCTAAAACCCAAACCAAATGATAGTTGAAG  600

seq1  TGTTTCTTTAAAGAACCTTTTAAAATGTCCAAATTCTTGCATATTTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTAAAGAACCTTTTAAAATGTCCAAATTCTTGCATATTTTCTA  650

seq1  TATTTCTTAATTTTTGTTTTATTTTGTCTGTTGCTTAAGGTTTGTATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAATTTTTGTTTTATTTTGTCTGTTGCTTAAGGTTTGTATAGT  700

seq1  AACTTCAATATAAGCAGATTTCAGTTAGGAAAGGGAAAAAGAGGTACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCAATATAAGCAGATTTCAGTTAGGAAAGGGAAAAAGAGGTACCCA  750

seq1  GGGTTCTTCATCAGCATCAGTGAAGAACTGGGATAGCCAGGCCTCTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTCATCAGCATCAGTGAAGAACTGGGATAGCCAGGCCTCTAGCC  800

seq1  TCCCTGCCATCTTTCGATGTATACATTTCCTTATGTTTTGTGTCACTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCATCTTTCGATGTATACATTTCCTTATGTTTTGTGTCACTGTA  850

seq1  ACTAGGCAGATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAGATGTATCTCGCCTGGTTTCTTGTTATTCTTCTGTATAAAAA  900

seq1  TTTTGATGCTTGACTTGTCAAATTACATTCAGA-TTCTACACAATCTCCT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTGATGCTTGACTTGTCAAATTACATTCAGATTTCTACACAATCTCCT  950

seq1  GTGTTGCGTCTGTCTGTCATTCATTCGCCGATTCCTTGTCCACCTGTAAC  999
      ||||||||| ||||| ||||||||||||||||||||||||||||| ||||
seq2  GTGTTGCGTTTGTCTTTCATTCATTCGCCGATTCCTTGTCCACCTATAAC  1000

seq1  C-AGAAACCCG-TTCTACGCAGTCAAGGGACCAAGAGGGTCTGCGGCAAC  1047
      | |||||| || ||||||||||||||||||||||| | | |||| || ||
seq2  CAAGAAACTCGTTTCTACGCAGTCAAGGGACCAAG-GAGGCTGCCGCCAC  1049

seq1  C--ATGCACAGAGGGCTGTGGAAGAGATTCACCTCCTGGTTGC  1088
      |  |||||||||||||||||||| |||||   |||||||||||
seq2  CCAATGCACAGAGGGCTGTGGAAAAGATTTCACTCCTGGTTGC  1092