BAC Information

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BAC

Clone NameB6Ng01-101D24
Chromosome14 (Build37)Y (Build37)
Map Location 12,014,449 - 12,015,5651,870,346 - 1,870,503
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneFhit, LOC100041974, LOC667030
Downstream geneEG382843, LOC100042427, LOC667059, LOC100041996, Ptprg, LOC100042441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101D24.bB6Ng01-101D24.g
ACCDH910497DH910498
length1,104494
definitionDH910497|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D24, 5' end.DH910498|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,014,449 - 12,015,565)(1,870,346 - 1,870,503)
sequence
gaattcatttctttgtatgttctgaaattcttctaggctcttgcttttcc
tcatgattatgctttcaggagcagggctggaggtatatgggaggaaagct
gaacaaagggaaactgatctgaccctcagctgagactcacagaggaagga
ctgagccaagtggagtctctatggtcaaaatctctatatatcaaaaagta
cacagttataatcagagtgaaaaagtgaatacctgggaaagtctggaaag
tgaaaaatagccatgctcaaatagaaaagtccaatggcacgagtctggaa
aatactgaagttagttttatttgtttgtttgctctgattttgagctatag
tcttgctgtattatctaggctatattctcctgctctcagctctccagtct
cagcatccagagagctgggagtacgcttacctgagagaagtgttgtggtt
tcaaacccggttcttttcaaattgacttaaatgtgacatgtagagagaca
gagaatgagcaaaagtggtttgaagtgaaaaatgtatgcaatttttaatc
tataaggacatggatattataaacaaaatgatgttaagaggcagatggag
caaagatatgaataatgaaaatggagacaccaacttctgctggggctgac
tccagcatattggcttttcctgcaatgctttcctctgcatgcaagagaag
cttgcctaggactttgtgggtctgttagcagagatttagtgcataaaggt
gtccagtgggaggtaagatctatttttgtggtggtaaagcattattgttg
gcatgccctaattgtgtttgcagtaaaattgaaggccattacaagagtgg
gaaatcagctgaacgatcataaataatgggtcaaatgagaggctgtgcag
cccagtcggcacatcatttttgtggtcattggtacttaggagtgcctact
gggtacctagcatgaaggaagcaaagctgtgactgtgagagcattaggct
gattctcaaggtgtattgtgcttggctccgaatacttggttcctttgtgt
cactactatggcagaattacttcaagactacaggtcacctcttcatctgt
cttt
tttgttcagctctgagccccattttttaatggggttatttgattttctgg
agtccaccttcctgagttctctatatatattggatattagtcccctatcc
gatttgggataggtaaagatcctttcccaagatggaccatctagtgattg
ccatatgcagggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcaagattttactgaaaggacccagatatagctctctctt
atgagactatgctggggcctagcaaacacagaagtggatgatcacagtca
gctattggatgggtcacacggcccccaatggaggagctagagaaattacc
caaggagctaaagggaactgcaaccctataggtggaacaacaatatgaac
taaccagtaccccggagctcttgattctagctgcatatgtatcaaaagat
ggcctagttggccatcactgcaaagagaggcccattggacttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12014449_12015565
seq2: B6Ng01-101D24.b_46_1149 (reverse)

seq1  AAAGACAGATGCAGAGGTGGACCTGTAGTCTTGAAGGTTATTTCTGCAAT  50
      ||||||||||| |||||| |||||||||||||||||  || |||||| ||
seq2  AAAGACAGATGAAGAGGT-GACCTGTAGTCTTGAAG--TAATTCTGCCAT  47

seq1  AGTAGTGAACACAAAGGAACCAGGTATTCGGGAGCCAAGCACAATACAAC  100
      ||||||| |||||||||||||| |||||| ||||||||||||||||| ||
seq2  AGTAGTG-ACACAAAGGAACCAAGTATTC-GGAGCCAAGCACAATAC-AC  94

seq1  CCTGAGGAAATCAGGCCTTAATGCTCTCACAGTCACAGCCTTTGCTTCCT  150
      | ||||  ||||||  | |||||||||||||||||||| |||||||||||
seq2  CTTGAG--AATCAG--CCTAATGCTCTCACAGTCACAG-CTTTGCTTCCT  139

seq1  TCATGCTAGGTACCCAGTAGGCACTCCCTAAGTACCAATGACCACAAAAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATGCTAGGTACCCAGTAGGCACT-CCTAAGTACCAATGACCACAAAAA  188

seq1  TGATGTTGCCGACTGGGCTGCACAGCCTCTCATTTGACCAATTATTTATG  250
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGATG-TGCCGACTGGGCTGCACAGCCTCTCATTTGACCCATTATTTATG  237

seq1  ATCGTTCAGCTGATTTCCCACTCTTGTAATGGCCTTCAATTTTACTGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCAGCTGATTTCCCACTCTTGTAATGGCCTTCAATTTTACTGCAA  287

seq1  ACACAATTAGGGCATGCCAACAATAATGCTTTACCACCACAAAAATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTAGGGCATGCCAACAATAATGCTTTACCACCACAAAAATAGAT  337

seq1  CTTACCTCCCACTGGACACCTTTATGCACTAAATCTCTGCTAACAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCCCACTGGACACCTTTATGCACTAAATCTCTGCTAACAGACCC  387

seq1  ACAAAGTCCTAGGCAAGCTTCTCTTGCATGCAGAGGAAAGCATTGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCCTAGGCAAGCTTCTCTTGCATGCAGAGGAAAGCATTGCAGGA  437

seq1  AAAGCCAATATGCTGGAGTCAGCCCCAGCAGAAGTTGGTGTCTCCATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAATATGCTGGAGTCAGCCCCAGCAGAAGTTGGTGTCTCCATTTT  487

seq1  CATTATTCATATCTTTGCTCCATCTGCCTCTTAACATCATTTTGTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTCATATCTTTGCTCCATCTGCCTCTTAACATCATTTTGTTTATA  537

seq1  ATATCCATGTCCTTATAGATTAAAAATTGCATACATTTTTCACTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATGTCCTTATAGATTAAAAATTGCATACATTTTTCACTTCAAAC  587

seq1  CACTTTTGCTCATTCTCTGTCTCTCTACATGTCACATTTAAGTCAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGCTCATTCTCTGTCTCTCTACATGTCACATTTAAGTCAATTTG  637

seq1  AAAAGAACCGGGTTTGAAACCACAACACTTCTCTCAGGTAAGCGTACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACCGGGTTTGAAACCACAACACTTCTCTCAGGTAAGCGTACTCC  687

seq1  CAGCTCTCTGGATGCTGAGACTGGAGAGCTGAGAGCAGGAGAATATAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCTGGATGCTGAGACTGGAGAGCTGAGAGCAGGAGAATATAGCC  737

seq1  TAGATAATACAGCAAGACTATAGCTCAAAATCAGAGCAAACAAACAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAATACAGCAAGACTATAGCTCAAAATCAGAGCAAACAAACAAATA  787

seq1  AAACTAACTTCAGTATTTTCCAGACTCGTGCCATTGGACTTTTCTATTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAACTTCAGTATTTTCCAGACTCGTGCCATTGGACTTTTCTATTTG  837

seq1  AGCATGGCTATTTTTCACTTTCCAGACTTTCCCAGGTATTCACTTTTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTATTTTTCACTTTCCAGACTTTCCCAGGTATTCACTTTTTCA  887

seq1  CTCTGATTATAACTGTGTACTTTTTGATATATAGAGATTTTGACCATAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATTATAACTGTGTACTTTTTGATATATAGAGATTTTGACCATAGA  937

seq1  GACTCCACTTGGCTCAGTCCTTCCTCTGTGAGTCTCAGCTGAGGGTCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTTGGCTCAGTCCTTCCTCTGTGAGTCTCAGCTGAGGGTCAGA  987

seq1  TCAGTTTCCCTTTGTTCAGCTTTCCTCCCATATACCTCCAGCCCTGCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCCTTTGTTCAGCTTTCCTCCCATATACCTCCAGCCCTGCTCC  1037

seq1  TGAAAGCATAATCATGAGGAAAAGCAAGAGCCTAGAAGAATTTCAGAACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATAATCATGAGGAAAAGCAAGAGCCTAGAAGAATTTCAGAACA  1087

seq1  TACAAAGAAATGAATTC  1117
      |||||||||||||||||
seq2  TACAAAGAAATGAATTC  1104

seq1: chrY_1870346_1870503
seq2: B6Ng01-101D24.g_414_571

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  CTAGAGAAATTACCCAAGGAGCTAAAGGGAACTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||| |||||||||| ||| |||||||
seq2  ACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGATTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTTGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGC  158
      |||| |||
seq2  GGACTTGC  158