BAC Information

Click to search

BAC

Clone NameB6Ng01-102E16
Chromosome10 (Build37)Y (Build37)
Map Location 96,560,200 - 96,561,383573,571 - 573,649
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102E16.bB6Ng01-102E16.g
ACCDH911224DH911225
length1,177673
definitionDH911224|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E16, 5' end.DH911225|Mus musculus domesticus DNA, BAC clone: B6Ng01-102E16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,560,200 - 96,561,383)(573,571 - 573,649)
sequence
gaattcagtttatagaacaatctttccttgaactcacagagatcctcctg
cctctgcctcccaagtgctggaattaaagaagtattccattgtgcccatt
ccctgcctgatgttttggggttgggttctctgctcatctgtgtgtatcac
aagtcagatacatcacatatctggaagttttgatgttcctgctgagagag
tgaccaaggtaaccatggtgatgtcttgatttcctattagccaagaggct
ctctgggacttttgacacagcattaatggcagtctcacccatacaacaag
ggaagtaaacccttaaaacttgtgggaaagtgttcaggtcttagtttgtg
tcacctttgttactgtatcttcacggccacagaaagttcacggccaagtg
ctgactccatgtggaaagagtcaatacatccaaggctctgggtgaaagga
tgagactggttatagctgtttgcaaaaatatttattgtaaacatgcctgc
tgcattcatttcaggtcatccacatcttcttataccttcacaaagttaaa
tgtgtactcaaatagtaaacatcaaccaagtgaggttggcagtagagttc
ccacttcaatcccagcactcaggagactcagacaggcagatctttgtgag
tttgaggccagcctggactacatagtgttcttaccaggacagccagggtc
acagagtgagaccttgtttcaaaagaacctaaaataatagatattagata
gatagatagatagatagatagatagataattatatacataggtacattaa
taggtaatataaaaaggcaaattagcaaatacctatagtcaccctaatat
ttaatttttttaatatcctatattatggccttttcatcagtaagtccttc
tgtttctgctgaatattttcccatactcagataaatttctttagatcatt
gcttcctactttaaaagcagtcttcataatttgagaaatccctttaatgt
gtagcagtgtttttttatatgcatatatgcacatatagttatttggatct
gcatttgtatacttcatggtacaggaatgtattgatcagctagtttttct
tgtgagaaaggtaaactcttaagacactgcttttatcaattttataatac
tagatgcacgactctatgacatgctct
gaattccagggcgaggaagcaggagtgggtgggttggggagcagggcggg
ggaagggaataggggactttcgggatagcatctgaaatgtaaatgaagaa
aatatccaataaataaataaataaataaataaataaatccaataaaagtg
tttatgagcttttgaagtttcctggtggagtttttagagacatttactta
tacaattatcatctgtaaataaagattcgttgacttcttcactcctttct
ttcttatttgtactctcttattccactcacaaaggcttcaagtatattgt
gctctccctccctccctctctagatagatagatagatagatagatagata
gatagatggatatcatgttgatgaagaggatgatgtgtggtaaggggaga
aaacacccactgctgatgggaatgcaaacttatacaaccactgtagaaat
cagtgtagtgattcatcagcacactgggaatatgtctacctcaagatcta
gctaggccactctcagccacatacccacagcgctccataccctatgacag
aggaacttgcccaacaatattcattttctgtctacttatagaagccagaa
attggaaaatatcttagctgcttcccaacagaagaatgagtaaaggaaat
gtagtacattttgtaccatggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_96560200_96561383
seq2: B6Ng01-102E16.b_43_1219

seq1  GAATTCAGTTTATAGAACAATCTTTCCTTGAACTCACAGAGATCCTCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTATAGAACAATCTTTCCTTGAACTCACAGAGATCCTCCTG  50

seq1  CCTCTGCCTCCCAAGTGCTGGAATTAAAGAAGTATTCCATTGTGCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCAAGTGCTGGAATTAAAGAAGTATTCCATTGTGCCCATT  100

seq1  CCCTGCCTGATGTTTTGGGGTTGGGTTCTCTGCTCATCTGTGTGTATCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTGATGTTTTGGGGTTGGGTTCTCTGCTCATCTGTGTGTATCAC  150

seq1  AAGTCAGATACATCACATATCTGGAAGTTTTGATGTTCCTGCTGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGATACATCACATATCTGGAAGTTTTGATGTTCCTGCTGAGAGAG  200

seq1  TGACCAAGGTAACCATGGTGATGTCTTGATTTCCTATTAGCCAAGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAAGGTAACCATGGTGATGTCTTGATTTCCTATTAGCCAAGAGGCT  250

seq1  CTCTGGGACTTTTGACACAGCATTAATGGCAGTCTCACCCATACAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGACTTTTGACACAGCATTAATGGCAGTCTCACCCATACAACAAG  300

seq1  GGAAGTAAACCCTTAAAACTTGTGGGAAAGTGTTCAGGTCTTAGTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAAACCCTTAAAACTTGTGGGAAAGTGTTCAGGTCTTAGTTTGTG  350

seq1  TCACCTTTGTTACTGTATCTTCACGGCCACAGAAAGTTCACGGCCAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTTGTTACTGTATCTTCACGGCCACAGAAAGTTCACGGCCAAGTG  400

seq1  CTGACTCCATGTGGAAAGAGTCAATACATCCAAGGCTCTGGGTGAAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCCATGTGGAAAGAGTCAATACATCCAAGGCTCTGGGTGAAAGGA  450

seq1  TGAGACTGGTTATAGCTGTTTGCAAAAATATTTATTGTAAACATGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTGGTTATAGCTGTTTGCAAAAATATTTATTGTAAACATGCCTGC  500

seq1  TGCATTCATTTCAGGTCATCCACATCTTCTTATACCTTCACAAAGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCATTTCAGGTCATCCACATCTTCTTATACCTTCACAAAGTTAAA  550

seq1  TGTGTACTCAAATAGTAAACATCAACCAAGTGAGGTTGGCAGTAGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTCAAATAGTAAACATCAACCAAGTGAGGTTGGCAGTAGAGTTC  600

seq1  CCACTTCAATCCCAGCACTCAGGAGACTCAGACAGGCAGATCTTTGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAATCCCAGCACTCAGGAGACTCAGACAGGCAGATCTTTGTGAG  650

seq1  TTTGAGGCCAGCCTGGACTACATAGTGTTCTTACCAGGACAGCCAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGCCAGCCTGGACTACATAGTGTTCTTACCAGGACAGCCAGGGTC  700

seq1  ACAGAGTGAGACCTTGTTTCAAAAGAACCTAAAATAATAGATATTAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGAGACCTTGTTTCAAAAGAACCTAAAATAATAGATATTAGATA  750

seq1  GATAGATAGATAGATAGATAGATAGATAATTATATACATAGGTACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAATTATATACATAGGTACATTAA  800

seq1  TAGGTAATATAAAAAGGCAAATTAGCAAATACCTATAGTCACCCTAATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATATAAAAAGGCAAATTAGCAAATACCTATAGTCACCCTAATAT  850

seq1  TTAATTTTTTTAATATCCTATATTATGGCCTTTTCATCAGTAAGTCCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTTAATATCCTATATTATGGCCTTTTCATCAGTAAGTCCTTC  900

seq1  TGTTTCTGCTGAATA-TTTCCCATACTCAAGATAAA-TTCTCTAGATCAT  948
      ||||||||||||||| |||||||||||| ||||||| |||| ||||||||
seq2  TGTTTCTGCTGAATATTTTCCCATACTC-AGATAAATTTCTTTAGATCAT  949

seq1  TGCTTCCTACTTTAAAAGCAGTCTTCATAATTTGAGAAATCCCTTTAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTACTTTAAAAGCAGTCTTCATAATTTGAGAAATCCCTTTAATG  999

seq1  TGTAGCAGTGTTTTTTTATATGCATATATGCACAATATAGTTATTTGGAT  1048
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTAGCAGTGTTTTTTTATATGCATATATGCAC-ATATAGTTATTTGGAT  1048

seq1  CTGCATATGTATACTTCATGGTACAAGGATGTAATTGATCAGCTAGTTTT  1098
      |||||| |||||||||||||||||| | |||| |||||||||||||||||
seq2  CTGCATTTGTATACTTCATGGTACAGGAATGT-ATTGATCAGCTAGTTTT  1097

seq1  --CTGTGAGAAAAGGTAAACTCTAAAGACACTGCCTTTGATGCAATTTTA  1146
         |||||| ||||||||||||| ||||||||| |||| || ||||||||
seq2  TCTTGTGAG-AAAGGTAAACTCTTAAGACACTG-CTTTTAT-CAATTTTA  1144

seq1  ATAAATACTAAAGAATGCACGACTCTATGACTTGCTCT  1184
         |||||||    ||||||||||||||||| ||||||
seq2  --TAATACTA---GATGCACGACTCTATGACATGCTCT  1177

seq1: chrY_573571_573649
seq2: B6Ng01-102E16.g_124_198

seq1  ATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATAACTA  50
      |||||||||||| |||||||||| |||||||||||||||||||||| | |
seq2  ATAGGGGACTTTCGGGATAGCATCTGAAATGTAAATGAAGAAAATATCCA  50

seq1  ATAAAAAATTTAAAATAAAATAAAATAAA  79
      ||||| || |  |||||||   |||||||
seq2  ATAAATAAAT--AAATAAA--TAAATAAA  75