BAC Information

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BAC

Clone NameB6Ng01-102F18
ChromosomeY (Build37)6 (Build37)
Map Location 1,870,394 - 1,870,57721,557,038 - 21,558,214
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102F18.bB6Ng01-102F18.g
ACCDH911276DH911277
length2281,173
definitionDH911276|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F18, 5' end.DH911277|Mus musculus domesticus DNA, BAC clone: B6Ng01-102F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,394 - 1,870,577)(21,557,038 - 21,558,214)
sequence
gaattctttgtttagctatgaaccccattttttaatggggttatgaacaa
cattattaactaatcagtactccggagctcttgactctagctgcatatgt
atcaaaagatggcctagtcggccatcactggaaagagaggcccattggac
aggcaaactttatatgccccagtacagcagaatgccagggccaaaaagtg
ggagtggatgggtaggggagtgggggcg
gaattcaatctccagttccatctaggattctgttgtacaaagtgcttacc
tgaagtcatattgcaatataatagctttgtggtgtttgatgaaaactgcc
atggctacaaatggaagtgtgttaaccaactgtagataaagcatctgaca
aattcaaagagactaagactacgtggcgcctaacacgacaccagagaagc
gctgagagaccgtgtgaaagctggtgtgagatagtctatgaatttcttta
tagtgatctcttttattagcacaatatatatttcaaaacatatttaatgc
cagccaagcaatattacaatctgtatagggtaagagctatagtctttctt
ttggatttaggaacgataaatctttcaaaaggaaagataatgatttgccc
aattcatacaattattcagatttcagtagggggaacacaattttgtgtga
atatgaaattcagagtgctgtaacattacatctcaaataaatgcaaactt
tcttttttttttaaactgaaaattgattctcctttcatgcagtacatccc
aaacacagcttcccctccctccactaatcctacctcgcctgtctctccca
agatccactccccttgcttcctcttctgaaaagagcaggcttccaagaga
agacagcaaaacggacaaaacaagatacgctaagacaaggtgagtcttga
caaggcaacccaataggaggaacagtgactcaagagcaggcaaaagagca
ggccgtgggcttcatggcaagattatggtggttagtacagaggcactagc
taggtacactctcaccctgagtgctgtccattttttttttttttttttga
gactctgtaacccaggttgagttccactttgtgatcctcccaattgtctc
tcccaagtgctgagattacagatgttccccatgcctggcatcatgctgtt
gtctctcttcctctatttttatttataactggtggagcaggggacttgtg
cacatgagtacaggtactcacagagtcagagaggtcattgggtctccctt
ggactggagtaatagtgcttgtgagctatcttttgtcagaaaaccattca
ctccaattgttgggggtctcacaaaataacaggctaacagccatagccta
tatactggcgaactgattcgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870394_1870577
seq2: B6Ng01-102F18.b_84_267

seq1  GAACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGC  50
      |||||||||||| |||||| || ||| || |||||||||||||| |||||
seq2  GAACAACATTATTAACTAATCAGTACTCCGGAGCTCTTGACTCTAGCTGC  50

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  100

seq1  TTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAA  150
      ||||||| |||||||||||||||||||||||||  ||| |||||||||||
seq2  TTGGACAGGCAAACTTTATATGCCCCAGTACAGCAGAATGCCAGGGCCAA  150

seq1  AAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGGTG  184
      |||| || ||||| |||||||||||||||||| |
seq2  AAAGTGGGAGTGGATGGGTAGGGGAGTGGGGGCG  184

seq1: chr6_21557038_21558214
seq2: B6Ng01-102F18.g_65_1237 (reverse)

seq1  GGTCTGAATCAGGTCCGCAGTAT-TATGCTATGGCTGTTAGCTTGTTATT  49
      |||| ||||||| ||  |||||| || ||||||||||||||| ||||| |
seq2  GGTC-GAATCAGTTCGCCAGTATATAGGCTATGGCTGTTAGCCTGTTA-T  48

seq1  TTTGTGAGACCCCCAACAATGGGAGTGAATGTGTTTCTGACATAGGATAG  99
      |||||||||||||||||||| ||||||||||  ||||||||| | |||||
seq2  TTTGTGAGACCCCCAACAATTGGAGTGAATGGTTTTCTGACAAAAGATAG  98

seq1  CTCACAACCACCTATTACTCCAGTCCCA-GGAGACCCAATGACCTCTTCT  148
      ||||||| || ||||||||||||||| | ||||||||||||||||| |||
seq2  CTCACAAGCA-CTATTACTCCAGTCCAAGGGAGACCCAATGACCTC-TCT  146

seq1  GACCTCTGTGAGTACCTGTACTCATGTGCAC-AGTCCCCTGCCTTCCAAC  197
      || |||||||||||||||||||||||||||| ||||||||||  ||| ||
seq2  GA-CTCTGTGAGTACCTGTACTCATGTGCACAAGTCCCCTGC--TCC-AC  192

seq1  CAGTTATAAAT-AAAATAGAGGAAGAGGAGACAACAGCATGATGCCAGGC  246
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CAGTTATAAATAAAAATAGAGGAAGA-GAGACAACAGCATGATGCCAGGC  241

seq1  ATGGGGAACATCTGTAATCTCAGCACTTGGGAGAGACAATTGGGAGGATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAACATCTGTAATCTCAGCACTTGGGAGAGACAATTGGGAGGATC  291

seq1  ACAAAGTGGAACTCAACCTGGGTTACAGAGTCTC-AAAAAAAAAAAAAAA  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAAGTGGAACTCAACCTGGGTTACAGAGTCTCAAAAAAAAAAAAAAAA  341

seq1  AATGGACAGCACTCAGGGTGAGAGTGTACCTAGCTAGTGCCTCTGTACTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAGCACTCAGGGTGAGAGTGTACCTAGCTAGTGCCTCTGTACTA  391

seq1  ACCACCATAATCTTGCCATGAAGCCCACGGCCTGCTCTTTTGCCTGCTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCATAATCTTGCCATGAAGCCCACGGCCTGCTCTTTTGCCTGCTCT  441

seq1  TGAGTCACTGTTCCTCCTATTGGGTTGCCTTGTCAAGACTCACCTTGTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGTTCCTCCTATTGGGTTGCCTTGTCAAGACTCACCTTGTCT  491

seq1  TAGCGTATCTTGTTTTGTCCGTTTTGCTGTCTTCTCTTGGAAGCCTGCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTATCTTGTTTTGTCCGTTTTGCTGTCTTCTCTTGGAAGCCTGCTC  541

seq1  TTTTCAGAAGAGGAAGCAAGGGGAGTGGATCTTGGGAGAGACAGGCGAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAGAGGAAGCAAGGGGAGTGGATCTTGGGAGAGACAGGCGAGG  591

seq1  TAGGATTAGTGGAGGGAGGGGAAGCTGTGTTTGGGATGTACTGCATGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAGTGGAGGGAGGGGAAGCTGTGTTTGGGATGTACTGCATGAAA  641

seq1  GGAGAATCAATTTTCAGTTTAAAAAAAAAAGAAAGTTTGCATTTATTTGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCAATTTTCAGTTTAAAAAAAAAAGAAAGTTTGCATTTATTTGA  691

seq1  GATGTAATGTTACAGCACTCTGAATTTCATATTCACACAAAATTGTGTTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATGTTACAGCACTCTGAATTTCATATTCACACAAAATTGTGTTC  741

seq1  CCCCTACTGAAATCTGAATAATTGTATGAATTGGGCAAATCATTATCTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTACTGAAATCTGAATAATTGTATGAATTGGGCAAATCATTATCTTT  791

seq1  CCTTTTGAAAGATTTATCGTTCCTAAATCCAAAAGAAAGACTATAGCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGAAAGATTTATCGTTCCTAAATCCAAAAGAAAGACTATAGCTCT  841

seq1  TACCCTATACAGATTGTAATATTGCTTGGCTGGCATTAAATATGTTTTGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTATACAGATTGTAATATTGCTTGGCTGGCATTAAATATGTTTTGA  891

seq1  AATATATATTGTGCTAATAAAAGAGATCACTATAAAGAAATTCATAGACT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATTGTGCTAATAAAAGAGATCACTATAAAGAAATTCATAGACT  941

seq1  ATCTCACACCAGCTTTCACACGGTCTCTCAGCGCTTCTCTGGTGTCGTGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACACCAGCTTTCACACGGTCTCTCAGCGCTTCTCTGGTGTCGTGT  991

seq1  TAGGCGCCACGTAGTCTTAGTCTCTTTGAATTTGTCAGATGCTTTATCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGCCACGTAGTCTTAGTCTCTTTGAATTTGTCAGATGCTTTATCTA  1041

seq1  CAGTTGGTTAACACACTTCCATTTGTAGCCATGGCAGTTTTCATCAAACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTTAACACACTTCCATTTGTAGCCATGGCAGTTTTCATCAAACA  1091

seq1  CCACAAAGCTATTATATTGCAATATGACTTCAGGTAAGCACTTTGTACAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGCTATTATATTGCAATATGACTTCAGGTAAGCACTTTGTACAA  1141

seq1  CAGAATCCTAGATGGAACTGGAGATTGAATTC  1177
      ||||||||||||||||||||||||||||||||
seq2  CAGAATCCTAGATGGAACTGGAGATTGAATTC  1173