BAC Information

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BAC

Clone NameB6Ng01-102N24
ChromosomeY (Build37)4 (Build37)
Map Location 1,870,443 - 1,870,575146,766,188 - 146,767,436
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102N24.bB6Ng01-102N24.g
ACCDH911637DH911638
length1861,137
definitionDH911637|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N24, 5' end.DH911638|Mus musculus domesticus DNA, BAC clone: B6Ng01-102N24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,443 - 1,870,575)(146,766,188 - 146,767,436)
sequence
tttgttcaattctgagccccattttttaatggggttatttgattttctgg
acatatgtatcaaaagatggcctagttggccatcactggaaagagaggcc
cattggacacacaaactttatatgccccagtacaggggaatgccagggcc
aaaaaaaatgagaatgggtgggtagggaagtggggg
gaattcatacagtagagaaaatttacaaaaatgcagtgaatgtgataaat
gctttactaataaaggcagactgagaattaatcagataatttatacattt
aaaaaaaaaccttacaagtattttgtatgtgataaatgcagtacccacaa
catcagtctgacaaatcaacaaatatttcaaacagtagagcaacattata
aatgaaatgaatgagataatcctttaacaagaaatatcatcttaaaattc
actggagaattcttccaaaagggaaacttttcaaatacattgatggtttg
aatcctttattttggcctatctcttagaatgtaacagataatttatacag
gcaagaatcttaacaaatataatatatgctgaaatatctttgacttcatt
tcagtgcagaaaaaatatgtaaaatatttttttatgggaaaaaaagttct
cctggggaaatgtggcatatgttttacacgggtaatattcttttcaacag
ttagtgctctaaactagagaattatgaatctgaaaacttttgaaaacctt
catgcaatgttcaaatcttagataatgtcaactattatgctggcagtaac
tctgaatatatgataatgaagaaacattttcattaaacttttacttgttc
accctcaaatattatatgatgaagtcaggtgtgaaagccagaagaatatg
atgttgtgcaacaattcatggagatagaaatgatccattccaaaaggaaa
ctaaataaagagtgtactatcgccttcaaaatgtctaataaaactggcag
cattttgtatatttaattcaaatgaagaaattgacacagattgtacttga
tagtgtatttgacaaactgagccaccaagactgcatgttcttaatcctat
aatatgcctacagatgtgaagtgtgcttgagtatccagtattcattattc
ttatcacgtcaatgtgacaatgatttattggttttcacgtttcagatagt
gactgactatgagtcccttatgcttctgtcacatctcttctcattgcctt
gtaataaagctgatttttttacaggtgacttggctgtttcagttgcaact
tatatttagatgataatgttgcatcatcgccttgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870443_1870575
seq2: B6Ng01-102N24.b_103_237

seq1  CATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  50
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATATGTATCAAAAGATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCC  50

seq1  ATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCC-  99
      ||||||||  ||||||||||||||||||||||||||||| ||||||||| 
seq2  ATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  100

seq1  -AAAAAGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  133
       |||||  |  | ||||||||||||| ||||||||
seq2  AAAAAAATGAGAATGGGTGGGTAGGGAAGTGGGGG  135

seq1: chr4_146766188_146767436
seq2: B6Ng01-102N24.g_68_1204

seq1  GAATTCATACAGTAGAGAAAATTTACAAAAATGCAGTGAATGTGATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTAGAGAAAATTTACAAAAATGCAGTGAATGTGATAAAT  50

seq1  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTAATAAAGGCAGACTGAGAATTAATCAGATAATTTATACATTT  100

seq1  AAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACCTTACAAGTATTTTGTATGTGATAAATGCAGTACCCACAA  150

seq1  CATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAACATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCTGACAAATCAACAAATATTTCAAACAGTAGAGCAACATTATA  200

seq1  AATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTTAAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAATGAGATAATCCTTTAACAAGAAATATCATCTTAAAATTC  250

seq1  ACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAATTCTTCCAAAAGGGAAACTTTTCAAATACATTGATGGTTTG  300

seq1  AATCCTTTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTTATTTTGGCCTATCTCTTAGAATGTAACAGATAATTTATACAG  350

seq1  GCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATCTTAACAAATATAATATATGCTGAAATATCTTTGACTTCATT  400

seq1  TCAGTGCAGAAAAAATATGTAAAATATTTTTTTATGGGAAAAAAAGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAGAAAAAATATGTAAAATATTTTTTTATGGGAAAAAAAGTTCT  450

seq1  CCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGAAATGTGGCATATGTTTTACACGGGTAATATTCTTTTCAACAG  500

seq1  TTAGTGCTCTAAACTAGAGAATTATGAATCTGAAAACTTTTGAAAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTCTAAACTAGAGAATTATGAATCTGAAAACTTTTGAAAACCTT  550

seq1  CATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATGTTCAAATCTTAGATAATGTCAACTATTATGCTGGCAGTAAC  600

seq1  TCTGAATATATGATAATGAAGAAACATTTTCATTAAACTTTTACTTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATATATGATAATGAAGAAACATTTTCATTAAACTTTTACTTGTTC  650

seq1  ACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAAATATTATATGATGAAGTCAGGTGTGAAAGCCAGAAGAATATG  700

seq1  ATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTGCAACAATTCATGGAGATAGAAATGATCCATTCCAAAAGGAAA  750

seq1  CTAAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAAAGAGTGTACTATCGCCTTCAAAATGTCTAATAAAACTGGCAG  800

seq1  CATTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATATTTAATTCAAATGAAGAAATTGACACAGATTGTACTTGA  850

seq1  TAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATTTGACAAACTGAGCCACCAAGACTGCATGTTCTTAATCCTAT  900

seq1  AATATGCCTACAGATGTGAAGTGTGCTTTGAGTATCCAGTATTCATTATT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATATGCCTACAGATGTGAAGTGTGC-TTGAGTATCCAGTATTCATTATT  949

seq1  CTTATCACGTCAATGTGACAAATGATTTATTGG-TTTCACGTTTCAGGAT  999
      ||||||||||||||||||| ||||||||||||| |||||||||||| |||
seq2  CTTATCACGTCAATGTGAC-AATGATTTATTGGTTTTCACGTTTCA-GAT  997

seq1  AGTGACTGACTATGAGTCCCTTATGC-TCTGTCAACATCTCCTTCCTCAT  1048
      |||||||||||||||||||||||||| |||||| |||||||  | |||||
seq2  AGTGACTGACTATGAGTCCCTTATGCTTCTGTC-ACATCTC--TTCTCAT  1044

seq1  TGCCCTGTAAATAAAGCTGAATATTTTAACAAGGTTGACTTGGCTGTTTT  1098
      |||| ||| |||||||||| || |||| |||  | ||||||||||| |||
seq2  TGCCTTGT-AATAAAGCTG-ATTTTTTTACA--GGTGACTTGGCTG-TTT  1089

seq1  CAGTTTGCACTTATAATTAGATGAATAAATGTTGCATCATCG-CTGGAAC  1147
      |||||   ||||||| ||||||||   ||||||||||||||| || || |
seq2  CAGTTGCAACTTATATTTAGATGA--TAATGTTGCATCATCGCCTTGACC  1137

seq1  TATTTCTCATAAAGTATTTGCTGAAGTCATGAATATTTTCTGTAAACCTG  1197
                                                        
seq2  --------------------------------------------------  1137

seq1  TAACTTAAACTTAATATTTGTGATTGTCAGCTGGTCAATAACAACCTTGA  1247
                                                        
seq2  --------------------------------------------------  1137

seq1  CC  1249
        
seq2  --  1137