BAC Information

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BAC

Clone NameB6Ng01-103H20
ChromosomeY (Build37)18 (Build37)
Map Location 1,120,586 - 1,121,05478,486,727 - 78,487,746
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103H20.bB6Ng01-103H20.g
ACCDH912063DH912064
length9381,014
definitionDH912063|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H20, 5' end.DH912064|Mus musculus domesticus DNA, BAC clone: B6Ng01-103H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,586 - 1,121,054)(78,486,727 - 78,487,746)
sequence
gaattctttgtttagctctgaggcccatttttttttctttccatttttta
ttaggtatttagctcatttacatttccaatgctataccaaaagtccccca
tacccacccacccccactcccctacccgcccactccccctttttggccct
ggcgttcccctgttctggggcatataaagtttgtgtgtccaatgggcctc
tctttccagtgatggccgactaggccatcttttgatatatatgcagctag
agtcaagagctccggggtactggttagttcataatgttgatccacctgta
gggttgcagatccctttagctccttgggtactttctctagctcctccatt
gggagccctgtgatccatccattagctgactgtgggcatccacttctgtg
tttgctaggccccggcatagtctcacaagagacagctacatctgggtcct
ttcgataaaatcttgctagtgtatgcaatggtgtcagcgtttggatgctg
attatggggtggatccctggataaggcagtctctacatggtccatccttt
catctcagctccaaactttgtctctgtaactccttccaagggtgttttgt
tcccacttctaaggaggggcatagtgtccacacttcagtcttcatttttc
ttgagttttcatgtgtttaggaaattgtatcttatatcttggttatccta
ggttttgggctaatatccacttatcagtgagtacatatttgtgtgagttc
ctttgtgaatgtgttacctcactcaggatgatgccctccaggtccatcca
tttggctaggaattttcataaattcattcttttttaatagctgagtagta
ctccattgtgtagatgtacccacatttttctgtatccattcctctgttga
ggggcatctgggttctttccagctttctggctattata
gaattcagtaccacagtcaggagcaaaaatctaaatatgtgaaaatactt
cttgagcagtcctacaagacactgagcacaatgcataacaaataggtcag
ttgtgtttcagagtccttggaaccatcacgggtgacataagcatattttt
taccaccattatttaataaaagctttcttgtgtgctgaggccaagggctt
tggcacatacgcagtacaagtcattcgacttaacagtcagtgacaaagag
aaacgaagccaaggaacatctaggctgtagatctctaaggattttggaag
caagagaagaaaggacattgttcaagaaacatggattatatcaatagcgc
tgcagccatgcattttaaactcattccagttcatccttcctaggagagga
agacaaggaaatgacatcagtgtgggtcttatacagtccttatttaattt
gcttgcttttgtaattgactgctacatatttgagcatggaatccactagt
tctgtgatcttggtattatcaacttttatttatttatttatttatttatt
tatttaggaactgtgttgggggggaccaggaagggggcaatggctggatt
gtaaaaaaaaaaaaaacaaaaaggatggaccagacattaagagaacagcc
aaccaatgactaccccaacttgagacccagttcatgtgagagagctaatc
cctgactcttaatgacggtctgctattcttgaagacaggagccttgcata
actgagaatcttcatccagtagcagaaacagattcagaatcccacagaca
aacatcagttggagctccgggaatcttgtgaaagagtggaggaataggat
tgaactagtctgaaaggttatggcaccacagaagactgacagaatcacca
atgtgggcctatgggggctcacagagattgaccaccaaccacaagcttgt
atgagctggacataggccctgatatatttgtgacagattatgcagcgtgt
ctcatgtggatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120586_1121054
seq2: B6Ng01-103H20.b_76_544

seq1  TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  50
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTCTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  100
      ||||||||||||||||||||| |||||||||||||||||||| ||| |||
seq2  CTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCGCCC  100

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  150
      |||||||||||||||||||||  ||||||||| |||||||||||||||||
seq2  ACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTT  150

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  200

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCA  250

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  300
      ||| |||| ||||||| |||||||| |||||||||||||||||||| |||
seq2  TAATGTTGATCCACCTGTAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  300

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  350
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACT  350

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  400
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGGGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCACAAGAG  400

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  450
      |||||||||||||  ||||||| |||||||||||||||||||||||||||
seq2  ACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGG  450

seq1  TGTCAGCGTTTGGATGCTG  469
      |||||||||||||||||||
seq2  TGTCAGCGTTTGGATGCTG  469

seq1: chr18_78486727_78487746
seq2: B6Ng01-103H20.g_67_1080

seq1  GAATTCAGTACCACAGTCAGGAGCAAAAATCTAAATATGTGAAAATACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACCACAGTCAGGAGCAAAAATCTAAATATGTGAAAATACTT  50

seq1  CTTGAGCAGTCCTACAAGACACTGAGCACAATGCATAACAAATAGGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCAGTCCTACAAGACACTGAGCACAATGCATAACAAATAGGTCAG  100

seq1  TTGTGTTTCAGAGTCCTTGGAACCATCACGGGTGACATAAGCATATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCAGAGTCCTTGGAACCATCACGGGTGACATAAGCATATTTTT  150

seq1  TACCACCATTATTTAATAAAAGCTTTCTTGTGTGCTGAGGCCAAGGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCATTATTTAATAAAAGCTTTCTTGTGTGCTGAGGCCAAGGGCTT  200

seq1  TGGCACATACGCAGTACAAGTCATTCGACTTAACAGTCAGTGACAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATACGCAGTACAAGTCATTCGACTTAACAGTCAGTGACAAAGAG  250

seq1  AAACGAAGCCAAGGAACATCTAGGCTGTAGATCTCTAAGGATTTTGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAGCCAAGGAACATCTAGGCTGTAGATCTCTAAGGATTTTGGAAG  300

seq1  CAAGAGAAGAAAGGACATTGTTCAAGAAACATGGATTATATCAATAGCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGAAAGGACATTGTTCAAGAAACATGGATTATATCAATAGCGC  350

seq1  TGCAGCCATGCATTTTAAACTCATTCCAGTTCATCCTTCCTAGGAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATGCATTTTAAACTCATTCCAGTTCATCCTTCCTAGGAGAGGA  400

seq1  AGACAAGGAAATGACATCAGTGTGGGTCTTATACAGTCCTTATTTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAAATGACATCAGTGTGGGTCTTATACAGTCCTTATTTAATTT  450

seq1  GCTTGCTTTTGTAATTGACTGCTACATATTTGAGCATGGAATCCACTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTTTTGTAATTGACTGCTACATATTTGAGCATGGAATCCACTAGT  500

seq1  TCTGTGATCTTGGTATTATCAACTTTTATTTATTTATTTATTTATTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGATCTTGGTATTATCAACTTTTATTTATTTATTTATTTATTTATT  550

seq1  TATTTAGGAACTGTGTTGGGGGGGACCAGGAAGGGGGCAATGGCTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGGAACTGTGTTGGGGGGGACCAGGAAGGGGGCAATGGCTGGATT  600

seq1  GTAAAAAAAAAAAAAACAAAAAGGATGGACCAGACATTAAGAGAACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAAAAAAAAACAAAAAGGATGGACCAGACATTAAGAGAACAGCC  650

seq1  AACCAATGACTACCCCAACTTGAGACCCAGTTCATGTGAGAGAGCTAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGACTACCCCAACTTGAGACCCAGTTCATGTGAGAGAGCTAATC  700

seq1  CCTGACTCTTAATGACGGTCTGCTATTCTTGAAGACAGGAGCCTTGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTCTTAATGACGGTCTGCTATTCTTGAAGACAGGAGCCTTGCATA  750

seq1  ACTGAGAATCTTCATCCAGTAGCAGAAACAGATTCAGAATCCCACAGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAATCTTCATCCAGTAGCAGAAACAGATTCAGAATCCCACAGACA  800

seq1  AACATCAGTTGGAGCTCCGGGAATCTTGTGAAAGAGTGGAGGAATAGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGTTGGAGCTCCGGGAATCTTGTGAAAGAGTGGAGGAATAGGAT  850

seq1  TGAACTAGTCTGAAAGGTTAATGGCACCACAAGAAGACTGACAGAATCAA  900
      ||||||||||||||||||| |||||||||| ||||||||||||||||| |
seq2  TGAACTAGTCTGAAAGGTT-ATGGCACCAC-AGAAGACTGACAGAATC-A  897

seq1  CCAATGTGGGCCTATGGGGGCTCACAGAGATTGAACCACCAACCAACAAG  950
      ||||||||||||||||||||||||||||||||| |||||||||| |||||
seq2  CCAATGTGGGCCTATGGGGGCTCACAGAGATTG-ACCACCAACC-ACAAG  945

seq1  CTTGTATGAGCTGGACATAGGCCCTGATATATTTGTGACAGA-TATGCAG  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGTATGAGCTGGACATAGGCCCTGATATATTTGTGACAGATTATGCAG  995

seq1  CGTGGTCTTCATGTGGATCCC  1020
      ||| ||| |||||||||||||
seq2  CGT-GTC-TCATGTGGATCCC  1014