BAC Information

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BAC

Clone NameB6Ng01-104K02
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,588 - 1,120,90422,954,938 - 22,956,018
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104K02.bB6Ng01-104K02.g
ACCDH912871DH912872
length8231,084
definitionDH912871|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K02, 5' end.DH912872|Mus musculus domesticus DNA, BAC clone: B6Ng01-104K02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,588 - 1,120,904)(22,954,938 - 22,956,018)
sequence
gaattctttagctctgagcctcattttttaatggggttatttgattttct
ggagtccaccttcttgatatattggatattagtcccctatctgatttagg
ataggtaaagatcctttcccaatctgttggtggcctttttgtcttattga
cattgtcttttgccttgcagaagctttgcaatttttttctatttttttaa
attaggtatttagctcatttacatttccaatgctataccaaaagtccccc
atacccacccccctcactcccctacccacccactccccctttttggccct
ggtgttcccctgtactggggcatataaagtttgcaagtccaatggacatc
tctttcaagtgatggcctattaggccatcttttgatacatatgcagctag
agacaagagctctggggtactgattagttcatattgttgttccacctata
gggttgcagttccctttagttccttgggtgctttctctagctcctccatt
gagggccctgtgatccattcaatagctgactgtgagtatccacttctctg
tttgctaggtcctggcatagtctcacaagagacagctatatctgggtcct
ttcagcaaaatcttgctagtgtttgcaatggtgtcagcgtttggaagctg
atcatgggatggatctctggatatggcaatcactagatggtccatccttt
cgtcacacttccaaatttttgtctctgtaactccttccatgggtgttttt
gtttcctattctaagaaggggcaaaagtgtccacactttggtcttcgttc
tctttgagtttaattgtgtttta
gaattcaaagatgtgtatctaaaagtcatatatacacacacacacatata
tatatacaaaccaatatttgtgttgtagttaatattcctgcaagaaagtc
aaagttttgatgtttttacttaggctattcatatgctctgataattatgt
ctgtggaagctcatgtagacccataaataatctgatgatcaacacagcaa
aatgtcctataacatttaaaatagcatcttccttttttccatagctctct
acattttttcctattataactattatttaagtggaaagagtttataggga
ataaatgaagtaatctgctttgcaaactctttggggcccagtaatgacaa
atggtggttaatattctcgatatcattagctctaaactataaaccacaga
ataggagcaatgacaccacctgtgttttttaagaatgcaaatatgggatc
ttactgcaactcactaaattgtttgaatcatgctcatgttcaagaacaaa
atgaagttaatgaagtttatataacttttatgaccatgtaagtctattgt
aaaatatattatgtataattatatatgggtttgtatagctaagtatttag
cttatacatatgcatagccacacatgaaatatgtcagatcatacatgtga
gatatgtgggaaatatgtatgttgaaaatacataacatagatgtactttt
acattcatatacatgcattataaacacattctattgtctattatctatct
attctaactatgtatctaactatgtatctatctatataaaactttccatc
tctaatctattatttatatctattatatctgtctgtctgtctgtctttct
gtctctatcatctatgtatctaactatgtatctatctgtatataacttcc
accttctaattgattattgaaatctattatatctgtctgtctgcctctac
atctatctaaccatctatcgatcaatctattctatctatcttatgtttca
tctacgtgccacatttccctggggaacttctccatattctctggaaagaa
tattatctttaaactctgttactgaactgttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120588_1120904
seq2: B6Ng01-104K02.b_220_538

seq1  TTTTTTTCCATTTTTT---ATTAGGTATTTAACTCATTTACATTTCCAAT  47
      |||||||| |||||||   |||||||||||| ||||||||||||||||||
seq2  TTTTTTTCTATTTTTTTAAATTAGGTATTTAGCTCATTTACATTTCCAAT  50

seq1  GCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACC  97
      |||||||||||||||||||||| |||||| ||| ||||||||| ||||||
seq2  GCTATACCAAAAGTCCCCCATACCCACCC-CCCTCACTCCCCTACCCACC  99

seq1  CACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGT  147
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGT  149

seq1  TTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCT  197
      ||||||||||||||| | |||||||| |||||||||| | ||||||||||
seq2  TTGCAAGTCCAATGGACATCTCTTTCAAGTGATGGCCTATTAGGCCATCT  199

seq1  TTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTC  247
      ||||||| |||||||||||||| ||||||||| ||||||||| |||| ||
seq2  TTTGATACATATGCAGCTAGAGACAAGAGCTCTGGGGTACTGATTAGTTC  249

seq1  ATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTA  297
      |||  ||||||||||||||||||||| || ||||||||| ||||||| | 
seq2  ATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTG  299

seq1  CTTTCTCTAGCTCCTCCATT  317
      ||||||||||||||||||||
seq2  CTTTCTCTAGCTCCTCCATT  319

seq1: chr6_22954938_22956018
seq2: B6Ng01-104K02.g_68_1151 (reverse)

seq1  TCTAACTACTCAGTAACAGAG-TTCAAGATCATAT--CTTCCAGAGAACT  47
      ||||||   |||||||||||| || ||||| ||||   |||||||||| |
seq2  TCTAACAGTTCAGTAACAGAGTTTAAAGATAATATTCTTTCCAGAGAA-T  49

seq1  ATGAGAAAGGTCCCCAGAG-AATGTGGCACGTAGATAGATACAT-AGATA  95
      |||   ||| ||||||| | |||||||||||||||| || |||| |||||
seq2  ATGGAGAAGTTCCCCAGGGAAATGTGGCACGTAGAT-GAAACATAAGATA  98

seq1  GATAG-ATAGATAGATAGATAGATAGATAGATAGATAGATAGAGGCAGAC  144
      ||||| |||||| ||| ||||||| | |||||||||   |||||||||||
seq2  GATAGAATAGATTGATCGATAGATGGTTAGATAGAT--GTAGAGGCAGAC  146

seq1  AGACAGATATAATAGATATCAATAATCAATTAGAAAGGTGGAAGTTATAT  194
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  AGACAGATATAATAGATTTCAATAATCAATTAG-AAGGTGGAAGTTATAT  195

seq1  ACAGATAGATACATAGTTAGATACATAGATGATAGAGACAGAAAGACAGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGATACATAGTTAGATACATAGATGATAGAGACAGAAAGACAGA  245

seq1  CAGACAGACAGATATAATAGATATAAATAATAGATTAGAGATGGAAAGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGATATAATAGATATAAATAATAGATTAGAGATGGAAAGTT  295

seq1  TTATATAGATAGATACATAGTTAGATACATAGTTAG-ATAGATAGATAAT  343
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATATAGATAGATACATAGTTAGATACATAGTTAGAATAGATAGATAAT  345

seq1  AGACAATAGAATGTGTTTATAATGCATGTATATGAATGT-AAAGTACATC  392
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGACAATAGAATGTGTTTATAATGCATGTATATGAATGTAAAAGTACATC  395

seq1  TATGTTATGTATTTTCAACATACATATTTCCCACATATCTCACATGTATG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATGTATTTTCAACATACATATTTCCCACATATCTCACATGTATG  445

seq1  ATCTGACATATTTCATGTGTGGCTATGCATATGTATAAGCTAAATACTTA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATATTTCATGTGTGGCTATGCATATGTATAAGCTAAATACTTA  495

seq1  GCTATACAAACCCATATATAATTATACATAATATATTTTACAATAGACTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACAAACCCATATATAATTATACATAATATATTTTACAATAGACTT  545

seq1  ACATGGTCATAAAAGTTATATAAACTTCATTAACTTCATTTTGTTCTTGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTCATAAAAGTTATATAAACTTCATTAACTTCATTTTGTTCTTGA  595

seq1  ACATGAGCATGATTCAAACAATTTAGTGAGTTGCAGTAAGATCCCATATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCATGATTCAAACAATTTAGTGAGTTGCAGTAAGATCCCATATT  645

seq1  TGCATTCTTAAAAAACACAGGTGGTGTCATTGCTCCTATTCTGTGGTTTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTTAAAAAACACAGGTGGTGTCATTGCTCCTATTCTGTGGTTTA  695

seq1  TAGTTTAGAGCTAATGATATCGAGAATATTAACCACCATTTGTCATTACT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGAGCTAATGATATCGAGAATATTAACCACCATTTGTCATTACT  745

seq1  GGGCCCCAAAGAGTTTGCAAAGCAGATTACTTCATTTATTCCCTATAAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCAAAGAGTTTGCAAAGCAGATTACTTCATTTATTCCCTATAAAC  795

seq1  TCTTTCCACTTAAATAATAGTTATAATAGGAAAAAATGTAGAGAGCTATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCACTTAAATAATAGTTATAATAGGAAAAAATGTAGAGAGCTATG  845

seq1  GAAAAAAGGAAGATGCTATTTTAAATGTTATAGGACATTTTGCTGTGTTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGGAAGATGCTATTTTAAATGTTATAGGACATTTTGCTGTGTTG  895

seq1  ATCATCAGATTATTTATGGGTCTACATGAGCTTCCACAGACATAATTATC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGATTATTTATGGGTCTACATGAGCTTCCACAGACATAATTATC  945

seq1  AGAGCATATGAATAGCCTAAGTAAAAACATCAAAACTTTGACTTTCTTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATATGAATAGCCTAAGTAAAAACATCAAAACTTTGACTTTCTTGC  995

seq1  AGGAATATTAACTACAACACAAATATTGGTTTGTATATATATATGTGTGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTAACTACAACACAAATATTGGTTTGTATATATATATGTGTGT  1045

seq1  GTGTGTATATATGACTTTTAGATACACATCTTTGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATATATGACTTTTAGATACACATCTTTGAATTC  1084