BAC Information

Click to search

BAC

Clone NameB6Ng01-105G06
Chromosome3 (Build37)Y (Build37)
Map Location 123,162,521 - 123,163,571573,321 - 573,366
singlet/doubletsingletsinglet
Overlap genePrss12
Upstream geneBcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik
Downstream geneEG668804, Ndst3, LOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105G06.bB6Ng01-105G06.g
ACCDH913426DH913427
length1,042500
definitionDH913426|Mus musculus domesticus DNA, BAC clone: B6Ng01-105G06, 5' end.DH913427|Mus musculus domesticus DNA, BAC clone: B6Ng01-105G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(123,162,521 - 123,163,571)(573,321 - 573,366)
sequence
gaattctgtcacctggccaagtgaggcttaggttggagcctggccttcac
taaataccacgctgagctgcaaatgtctctaagctctgccaaccagtgtg
aaaaaaagagacacttaaagagaagctttgaagatttcttccaattttgc
cattctatgttagaattttaaaatatgtgtcagcaagaccttgaaactca
taaaataatagcatgcagatgggatctactttagcttgttaatatacata
ttaaaggtgcagatgatttgtagtttaaaactacctagcacctaactggt
taacatggtaatatctataactttattcctgctacagcctccatcaacca
aacaataaacaatattaccaattgtcttcacaaccagtaagctgggttgc
tctgcttgtactaagaatatcttgtgcttagctgggcagtggtggcacac
tcctttaatcccagcatttgggaggcagaggaaggtggatttctgagttc
gaggccaacctgatctacagagtgagttccaggacagccaggactgtaca
gagaaacattgtctcgaaaaaccaaaaaagaaaaaagaaaagaaaagaaa
ggaaaggaaaagaaagggagaggagaggagagaagagaaaaaagaaaaga
aaagagaagagaagagaagagaagagaagagaagagaagagaagagaaga
gaagagaagagaaaaggtgcactaaaggatgatatggacagtaatattgg
cttctctggtttgtgtttgctgggtgatagtttattttttattttttatt
tttttgagatttattttgtgcatatgagcacactgttgctctcttcagag
acaccagaagagggcacaattttctattacagatggttgtgagccacatg
tggttactgggaattgaactaatgacctctggaagagcaatcaggttctt
acggctgagccatctctccagcccagttatattcttcttgatcaaacagg
atgtggtcactagtggaatgcctgtgctcacggcttgtgcta
gaattccttgatccacttaagacttgagctttgtacaaggagataagaat
ggatcaatttgcattcttctacatgataaccaccggttgagccagcacca
tttattgagaatgctgtctttttttccactggatggtttcagttcctttg
tcaaagaacaagtgaccataggtgtgtgggttcatttctgggtcaattct
attccattggtctacctgtctattgctgtaccagtaccatgctgtttttt
atcacaattgctctatagtacagcttgaggtcaggcatggtgatttccat
aatcagccaccaaacacagacactattgcatatgccagcaagattttgct
gataggaccctgatatagctgtctcttgtgaggctatgccagtgcctggc
aaatacagaagtggatgctcacagtcagctattggatggaacacagggcc
cccaatggaggagctagagaaagtacccaaggagctaaagtggtctgcaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123162521_123163571
seq2: B6Ng01-105G06.b_43_1084 (reverse)

seq1  TAGCACAAGCCACTGAAGCACAGACAATCCACTAGTGACCACATCCTGTT  50
      |||||||||||  || ||||||| || ||||||||||||||||||||| |
seq2  TAGCACAAGCC-GTG-AGCACAGGCATTCCACTAGTGACCACATCCTG-T  47

seq1  TTGATCAAAGAAAGAATATAAACTGGGGCTGGAGAGATGGCTCAGCGGTT  100
      ||||||||   |||||||| |||| ||||||||||||||||||||| | |
seq2  TTGATCAA--GAAGAATAT-AACT-GGGCTGGAGAGATGGCTCAGCCG-T  92

seq1  AAGAACACTGATTGCTCTTCCAGAGGTCATTAGTTCAATTCCCAGTAACC  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAC-CTGATTGCTCTTCCAGAGGTCATTAGTTCAATTCCCAGTAACC  141

seq1  ACATGTTGGCTCACAACCATCTGTAATAG-AAATTGTGCCCTCTTCTGGT  199
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATG-TGGCTCACAACCATCTGTAATAGAAAATTGTGCCCTCTTCTGGT  190

seq1  GTCTCTGAAGAGAGCAACAGTGTGCTCATATGCACAAAATAAATCTCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAAGAGAGCAACAGTGTGCTCATATGCACAAAATAAATCTCAAA  240

seq1  AAAATAAAAAATAAAAAATAAACTATCACCCAGCAAACACAAACCAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATAAAAAATAAACTATCACCCAGCAAACACAAACCAGAGA  290

seq1  AGCCAATATTACTGTCCATATCATCCTTTAGTGCACCTTTTCTCTTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATATTACTGTCCATATCATCCTTTAGTGCACCTTTTCTCTTCTCT  340

seq1  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCT  390

seq1  TTTCTTTTCTTTTTTCTCTTCTCTCCTCTCCTCTCCCTTTCTTTTCCTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCTTTTTTCTCTTCTCTCCTCTCCTCTCCCTTTCTTTTCCTTT  440

seq1  CCTTTCTTTTCTTTTCTTTTTTCTTTTTTGGTTTTTCGAGACAATGTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTTTCTTTTCTTTTTTCTTTTTTGGTTTTTCGAGACAATGTTTC  490

seq1  TCTGTACAGTCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGTTGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGTCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGTTGGCC  540

seq1  TCGAACTCAGAAATCCACCTTCCTCTGCCTCCCAAATGCTGGGATTAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCACCTTCCTCTGCCTCCCAAATGCTGGGATTAAAG  590

seq1  GAGTGTGCCACCACTGCCCAGCTAAGCACAAGATATTCTTAGTACAAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGCCACCACTGCCCAGCTAAGCACAAGATATTCTTAGTACAAGCA  640

seq1  GAGCAACCCAGCTTACTGGTTGTGAAGACAATTGGTAATATTGTTTATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACCCAGCTTACTGGTTGTGAAGACAATTGGTAATATTGTTTATTG  690

seq1  TTTGGTTGATGGAGGCTGTAGCAGGAATAAAGTTATAGATATTACCATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGATGGAGGCTGTAGCAGGAATAAAGTTATAGATATTACCATGT  740

seq1  TAACCAGTTAGGTGCTAGGTAGTTTTAAACTACAAATCATCTGCACCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTTAGGTGCTAGGTAGTTTTAAACTACAAATCATCTGCACCTTT  790

seq1  AATATGTATATTAACAAGCTAAAGTAGATCCCATCTGCATGCTATTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATATTAACAAGCTAAAGTAGATCCCATCTGCATGCTATTATTT  840

seq1  TATGAGTTTCAAGGTCTTGCTGACACATATTTTAAAATTCTAACATAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTCAAGGTCTTGCTGACACATATTTTAAAATTCTAACATAGAA  890

seq1  TGGCAAAATTGGAAGAAATCTTCAAAGCTTCTCTTTAAGTGTCTCTTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAATTGGAAGAAATCTTCAAAGCTTCTCTTTAAGTGTCTCTTTTT  940

seq1  TTCACACTGGTTGGCAGAGCTTAGAGACATTTGCAGCTCAGCGTGGTATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTGGTTGGCAGAGCTTAGAGACATTTGCAGCTCAGCGTGGTATT  990

seq1  TAGTGAAGGCCAGGCTCCAACCTAAGCCTCACTTGGCCAGGTGACAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAAGGCCAGGCTCCAACCTAAGCCTCACTTGGCCAGGTGACAGAAT  1040

seq1  TC  1051
      ||
seq2  TC  1042

seq1: chrY_573321_573366
seq2: B6Ng01-105G06.g_524_569

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAA  46
      |||||||||||||||||||||||||||||||||||| | |||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGTGGTCTGCAA  46