BAC Information

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BAC

Clone NameB6Ng01-105J03
Chromosome4 (Build37)Y (Build37)
Map Location 119,043,054 - 119,044,154573,321 - 573,555
singlet/doubletsingletsinglet
Overlap gene1700041C02Rik
Upstream geneBC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, Ldha-ps2
Downstream geneLOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J03.bB6Ng01-105J03.g
ACCDH913556DH913557
length1,098446
definitionDH913556|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J03, 5' end.DH913557|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,043,054 - 119,044,154)(573,321 - 573,555)
sequence
gaattcagcctcaagtattttgtcaaagcaagagacatggtccccgcatc
agcaaatgaaacaatcaagctggaagtcaagttgctttatttatttataa
tttgtattacacttaaatttgtgtgtgcgtatgtgtgcactgtgcatgtg
tgacagaggacagcccgtgggagtcagttttgtccttctgtcataggtct
tagagatcaaactcgggcttggtggcaagcacccttacctcctgagccat
ctcaccgatgctacctttatcgttttgagacgggcatctttcactgagcc
tagaccttaccaatttagctagctgggatagcccgtgagttctggggaca
cttccatctccatatgccaaaccagtaggggaacaggtggacagacactg
gaaatctgaacttaggtcctcgcgcttgcttggtaagaccttcgctgcct
gagccatctccccagctacctcttactttatctttaagcctcttctcata
ctccagctactgactactctaacttctttatcctgattataatcactaat
ccccaaatcctgtttcatttttaatatgctttgcacatacaaggcagagt
gattttcctaaagcatgaaccaattgtcttgcccaggctgctaaactcta
taggaggtttttgggtttttaaaaaaattttattgtgtaagcttctaact
agggttgtgaacacagctcagcttgtaaagccccatgattaatcccaata
tggcaatcaaacacctccctgatataggcattgcatggacctacatgtct
aggatcctgcctgcatcttatcctcatcgctccccttccctagagtaatt
ctaactatttcacacaaacatatgcccctggaacatcacattctgcctct
ccctccccatttccttttgtctctgtctgtctatccactggccccgcact
tcccccacccccattgcccttgatgaattattgagccagcagtgccttgg
ttaaactgtcttctttcatcagacacagaagatatatagtttatacacct
tctggtcagaacacctgcccatggacaaatggctaaaggttgattgtg
aacttctacgaaaggatggaccattcagagactgccccacccgggggtcc
atcccataatcagccaccaaacgcagacactattgcatatgccagcaaga
ttttgctgaaaggaccctgatatagctgtctcctgtgagaatttgccagt
gcctggcaaatacagaagtggatgctcacagtcatctataggatggaaca
cagggcccccaatgtaggagctagagaaagtacccaagagctgaaggggt
ctgcaaccctataggtggaacaacaatattaactaaccagtacccccaga
gctcatgtctctagctgcatatgtagcagaagatggcctagttggccatc
attgggaagagaggccccttggtctagcaaactttatatgccccagtaca
ggggaacaccagggccaagaagtgggaatgagtgggtaggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119043054_119044154
seq2: B6Ng01-105J03.b_43_1140

seq1  GAATTCAGCCTCAAGTATTTTGTCAAAGCAAGAGACATGGTCCCCGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTCAAGTATTTTGTCAAAGCAAGAGACATGGTCCCCGCATC  50

seq1  AGCAAATGAAACAATCAAGCTGGAAGTCAAGTTGCTTTATTTATTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGAAACAATCAAGCTGGAAGTCAAGTTGCTTTATTTATTTATAA  100

seq1  TTTGTATTACACTTAAATTTGTGTGTGCGTATGTGTGCACTGTGCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTACACTTAAATTTGTGTGTGCGTATGTGTGCACTGTGCATGTG  150

seq1  TGACAGAGGACAGCCCGTGGGAGTCAGTTTTGTCCTTCTGTCATAGGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGGACAGCCCGTGGGAGTCAGTTTTGTCCTTCTGTCATAGGTCT  200

seq1  TAGAGATCAAACTCGGGCTTGGTGGCAAGCACCCTTACCTCCTGAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCAAACTCGGGCTTGGTGGCAAGCACCCTTACCTCCTGAGCCAT  250

seq1  CTCACCGATGCTACCTTTATCGTTTTGAGACGGGCATCTTTCACTGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGATGCTACCTTTATCGTTTTGAGACGGGCATCTTTCACTGAGCC  300

seq1  TAGACCTTACCAATTTAGCTAGCTGGGATAGCCCGTGAGTTCTGGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTTACCAATTTAGCTAGCTGGGATAGCCCGTGAGTTCTGGGGACA  350

seq1  CTTCCATCTCCATATGCCAAACCAGTAGGGGAACAGGTGGACAGACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTCCATATGCCAAACCAGTAGGGGAACAGGTGGACAGACACTG  400

seq1  GAAATCTGAACTTAGGTCCTCGCGCTTGCTTGGTAAGACCTTCGCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGAACTTAGGTCCTCGCGCTTGCTTGGTAAGACCTTCGCTGCCT  450

seq1  GAGCCATCTCCCCAGCTACCTCTTACTTTATCTTTAAGCCTCTTCTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCCCCAGCTACCTCTTACTTTATCTTTAAGCCTCTTCTCATA  500

seq1  CTCCAGCTACTGACTACTCTAACTTCTTTATCCTGATTATAATCACTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCTACTGACTACTCTAACTTCTTTATCCTGATTATAATCACTAAT  550

seq1  CCCCAAATCCTGTTTCATTTTTAATATGCTTTGCACATACAAGGCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATCCTGTTTCATTTTTAATATGCTTTGCACATACAAGGCAGAGT  600

seq1  GATTTTCCTAAAGCATGAACCAATTGTCTTGCCCAGGCTGCTAAACTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCCTAAAGCATGAACCAATTGTCTTGCCCAGGCTGCTAAACTCTA  650

seq1  TAGGAGGTTTTTGGGTTTTTAAAAAAATTTTATTGTGTAAGCTTCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGTTTTTGGGTTTTTAAAAAAATTTTATTGTGTAAGCTTCTAACT  700

seq1  AGGGTTGTGAACACAGCTCAGCTTGTAAAGCCCCATGATTAATCCCAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTGAACACAGCTCAGCTTGTAAAGCCCCATGATTAATCCCAATA  750

seq1  TGGCAAACAAACACCTCCCTGATATAGGCATTGCATGGACCTACATGTCT  800
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAATCAAACACCTCCCTGATATAGGCATTGCATGGACCTACATGTCT  800

seq1  AGGATCCTGCCTGCATCTTATCCTCATCGCTCCCCTTCCCTAGAGTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCTGCCTGCATCTTATCCTCATCGCTCCCCTTCCCTAGAGTAATT  850

seq1  CTAAACTATTTCACACAAACATATGCCCCTTGAACATCACATTCTGCCTC  900
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CT-AACTATTTCACACAAACATATGCCCCTGGAACATCACATTCTGCCTC  899

seq1  TCCCTCCCCATTTCTCTTTGTCTCTGTCTGTCTACCCACT-GCCCCGCAC  949
      ||||||||||||||  |||||||||||||||||| ||||| |||||||||
seq2  TCCCTCCCCATTTCCTTTTGTCTCTGTCTGTCTATCCACTGGCCCCGCAC  949

seq1  TCCCCCCACCCCCATTTGCCCCTTGATAGACTATTGAGCCAGCAGTGCCT  999
      | ||||||||||||||   ||||||||  | |||||||||||||||||||
seq2  TTCCCCCACCCCCATT--GCCCTTGATGAATTATTGAGCCAGCAGTGCCT  997

seq1  T-GTTAAACTGTCTTCTTCCATCAGACCACAGAAGACTATAAAGTTAAAC  1048
      | |||||||||||||||| ||||||| ||||||||| |||| |||| |  
seq2  TGGTTAAACTGTCTTCTTTCATCAGA-CACAGAAGA-TATATAGTTTATA  1045

seq1  CACCCTCTGTCCAGAACACCTGCCCAGTGGACAAATGGCT-AATGTTGAA  1097
      |||| ||||  ||||||||||||||| ||||||||||||| || ||||| 
seq2  CACCTTCTGGTCAGAACACCTGCCCA-TGGACAAATGGCTAAAGGTTGAT  1094

seq1  TGTG  1101
      ||||
seq2  TGTG  1098

seq1: chrY_573321_573555
seq2: B6Ng01-105J03.g_288_522

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      ||| |||||||||||||||||||||| ||||| ||||| ||||||| |||
seq2  ATGTAGGAGCTAGAGAAAGTACCCAA-GAGCTGAAGGGGTCTGCAACCCT  49

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTATCCACAGAGCTCATGTCT  99
      |||| |||||||||||||| || ||||||||| || ||||||||||||||
seq2  ATAGGTGGAACAACAATATTAACTAACCAGTACCCCCAGAGCTCATGTCT  99

seq1  CTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTAGCTGCATATGTAGCAGAAGATGGCCTAGTTGGCCATCATTGGGAAGA  149

seq1  GAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCTTGGTCTAGCAAACTTTATATGCCCCAGTACAGGGGAACACC  199

seq1  AGGGCCAAGAAGTGGGAGAAGGTGGGTAGGGTAGCA  235
      |||||||||||||||||    |||||||||| ||||
seq2  AGGGCCAAGAAGTGGGAATGAGTGGGTAGGGGAGCA  235