BAC Information

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BAC

Clone NameB6Ng01-105J24
ChromosomeY (Build37)7 (Build37)
Map Location 1,870,346 - 1,870,435140,889,447 - 140,890,556
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J24.bB6Ng01-105J24.g
ACCDH913595DH913596
length5001,095
definitionDH913595|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J24, 5' end.DH913596|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,435)(140,889,447 - 140,890,556)
sequence
gaattctcaacagaggaacctctaatggccaagaagcacttaaagaaatg
ttcatacccaagatataagatacaatttgcgaaacacatgaagctcggga
agaacgaagaccaaggtgtggatactttgccccttcttggaattgggagc
aaggcacccatgaaaggagctacagagacagagtttggagctgagacgaa
aggatggaccatctagaggctgccatacccggggatccatcctataatca
gcctccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gaccctgatagagctgtctcttgtgagactatgccggggcctggcaaaca
cataagtagatgctcacagttagctattggatggatcacagggcccccaa
tggagaagctagagaaagtacccaaggagctaaagggatctgcaacccta
taggtggaacaacaatatgaactaaccagtaccccccggagctcttgact

gaattcctttttcaggtattgaagctctttcgttcccgcactactttttt
tggttttttgtttttttgttttttgagacagggtctctgtgtagccctgg
ctgtcctggaactcaatttgtagaccaggctggcctcgaactcagaaatc
ctcctgcctctgcctcccaagtgctgggattaaaggcatgcgacaccacg
cccagccctgcactacctttaaagtgcaaatgtccaggctgttctcccac
tcacagcgaagtgtcctctgaagccaagtaataagaccatggctgtcctt
tcagagggtgccctgagcacacctcccctagacaagggtctttgtcttga
ctggcttctctgaaccccacttatctacatgagccaaaaacaccagccct
gtaagactgccttggtgctcgtgtgataatgaggtcagctgttggcctct
gcttatcagacagtcagcatttggaagctgctaagttctgcaagcttctc
tttggagaaccctcatttcatcagggagatgtgatcagcttccatcggga
aatgagtaatgggctcgcgtagccagactggaatggagggggcagaggga
aggtttcacagcaaccagcaaggacccgcagcactgcagacacagggagt
ttagggagggtgctagcccggcccctctctctatgtggcactggagctcc
aactcacagagatccccctgcctgcctcctgagtgctgggtgggatgaaa
ggcgtgtgccactacaccctacaagctcttgacgagaagaagcagacaga
tgagggcttctcgcccttctccagaaagtgaacactcggcctaatctgcc
gaggagatagacaaaagcagggcccactcaggactgccacctgcacaagg
gaacacacgacttcagaggaaagaggtctgttggtcttcaatcaggagct
aaacaaccaggacctgtcacacagacagctcactggggaacaccatgggc
ttttacctcaaggaactttaaaagtactgagtctgaaaaaagtctatgca
gggttgacctgttcaggaacagtgagtcagcagcctaagtcccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870435
seq2: B6Ng01-105J24.b_455_546

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTA--CCCCTGAGCTCTTGACT  90
      |||||| ||||||||||||| ||  |||| ||||||||||||
seq2  ACAACAATATGAACTAACCAGTACCCCCCGGAGCTCTTGACT  92

seq1: chr7_140889447_140890556
seq2: B6Ng01-105J24.g_66_1160

seq1  GAATTCCTTTTTCAGGTATTGAAGCTCTTTCGTTCCCGCACTACTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTCAGGTATTGAAGCTCTTTCGTTCCCGCACTACTTTTTT  50

seq1  TGGTTTTTTGTTTTTTTGTTTTTTGAGACAGGGTCTCTGTGTAGCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTGTTTTTTTGTTTTTTGAGACAGGGTCTCTGTGTAGCCCTGG  100

seq1  CTGTCCTGGAACTCAATTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGAACTCAATTTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  150

seq1  CTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGACACCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGACACCACG  200

seq1  CCCAGCCCTGCACTACCTTTAAAGTGCAAATGTCCAGGCTGTTCTCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTGCACTACCTTTAAAGTGCAAATGTCCAGGCTGTTCTCCCAC  250

seq1  TCACAGCGAAGTGTCCTCTGAAGCCAAGTAATAAGACCATGGCTGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGAAGTGTCCTCTGAAGCCAAGTAATAAGACCATGGCTGTCCTT  300

seq1  TCAGAGGGTGCCCTGAGCACACCTCCCCTAGACAAGGGTCTTTGTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGTGCCCTGAGCACACCTCCCCTAGACAAGGGTCTTTGTCTTGA  350

seq1  CTGGCTTCTCTGAACCCCACTTATCTACATGAGCCAAAAACACCAGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTCTGAACCCCACTTATCTACATGAGCCAAAAACACCAGCCCT  400

seq1  GTAAGACTGCCTTGGTGCTCGTGTGATAATGAGGTCAGCTGTTGGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTGCCTTGGTGCTCGTGTGATAATGAGGTCAGCTGTTGGCCTCT  450

seq1  GCTTATCAGACAGTCAGCATTTGGAAGCTGCTAAGTTCTGCAAGCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATCAGACAGTCAGCATTTGGAAGCTGCTAAGTTCTGCAAGCTTCTC  500

seq1  TTTGGAGAACCCTCATTTCATCAGGGAGATGTGATCAGCTTCCATCGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGAACCCTCATTTCATCAGGGAGATGTGATCAGCTTCCATCGGGA  550

seq1  AATGAGTAATGGGCTCGCGTAGCCAGACTGGAATGGAGGGGGCAGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTAATGGGCTCGCGTAGCCAGACTGGAATGGAGGGGGCAGAGGGA  600

seq1  AGGTTTCACAGCAACCAGCAAGGACCCGCAGCACTGCAGACACAGGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCACAGCAACCAGCAAGGACCCGCAGCACTGCAGACACAGGGAGT  650

seq1  TTAGGGAGGGTGCTAGCCCGGCCCCTCTCTCTATGTGGCACTGGAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAGGGTGCTAGCCCGGCCCCTCTCTCTATGTGGCACTGGAGCTCC  700

seq1  AACTCACAGAGATCCCCCTGCCTGCCTCCTGAGTGCTGGGTGGGATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACAGAGATCCCCCTGCCTGCCTCCTGAGTGCTGGGTGGGATGAAA  750

seq1  GGCGTGTGCCACTACACCCTACAAGCTCTTGACGAGAAGAAGCAGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGTGCCACTACACCCTACAAGCTCTTGACGAGAAGAAGCAGACAGA  800

seq1  TGAAGGCTTCTCG-CCTTCTCCAGAAAGTGAACACTCGG-CTAATCTGCC  848
      ||| ||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGAGGGCTTCTCGCCCTTCTCCAGAAAGTGAACACTCGGCCTAATCTGCC  850

seq1  GAGGAGATAGACAAAGGCAGGGCCCACTCAGGACTGCCACCTGCACAAGG  898
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGAGATAGACAAAAGCAGGGCCCACTCAGGACTGCCACCTGCACAAGG  900

seq1  GAACACACGACTTCCAGAGGAAAGAGGTCTGTTGGGCCTTCCATTCAGGA  948
      ||||||||||||| ||||||||||||||||||||| |  | || ||||||
seq2  GAACACACGACTT-CAGAGGAAAGAGGTCTGTTGGTC--TTCAATCAGGA  947

seq1  GCTAAACAACCAGGACCTGTCACCACCAAGGACAGCTTCACT-GGGAACA  997
      ||||||||||||||||||||||    ||  |||||| ||||| |||||||
seq2  GCTAAACAACCAGGACCTGTCA----CACAGACAGC-TCACTGGGGAACA  992

seq1  CCATGGGCTTTTTACTCAGGGACTATTAGAAAGGTACTGAGTCTGAGAAA  1047
      ||||||||||||  |||| |||  | |  ||| |||||||||||  ||||
seq2  CCATGGGCTTTTACCTCAAGGA--ACTTTAAAAGTACTGAGTCT--GAAA  1038

seq1  AACGTCTTATGCAGGTGTGAACTCTGTTCAGGACCAGTGAGTCAAGCAGC  1097
      || ||| ||||||||  |||   |||||||||| ||||||||| ||||||
seq2  AAAGTC-TATGCAGGGTTGA--CCTGTTCAGGAACAGTGAGTC-AGCAGC  1084

seq1  CTAGAGTTCCCAG  1110
      ||| || ||||||
seq2  CTA-AG-TCCCAG  1095