BAC Information

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BAC

Clone NameB6Ng01-107H03
ChromosomeY (Build37)15 (Build37)
Map Location 1,120,587 - 1,120,75252,538,424 - 52,539,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107H03.bB6Ng01-107H03.g
ACCDH914913DH914914
length993895
definitionDH914913|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H03, 5' end.DH914914|Mus musculus domesticus DNA, BAC clone: B6Ng01-107H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,587 - 1,120,752)(52,538,424 - 52,539,319)
sequence
gaattcaagagatagaagagagactttcttttttttaaaattttttatta
cgtattttcctcaattacatttccaatgctatcccaaaagtcccccatac
ccccccactcccctacccgcccattcccactttttggccctggcattccc
ctgtactggggcatataaagtttgcaagtccaatgggccgaggagagact
ttcagatgcagaagataccatagaaaacatggtatcttctttgatacaac
agtcaaagaaaatgcaaactacaaaaagctcctaacccaaaacatctgga
aatccaggacacaacgagagacaaaacataaggataatagatataaaaga
gaacaaagatttgcaatttaaagggctagtaactatcttcaacaaaatta
tagaagaaaacctaaaccctaacctaaagaaagagatgtccatgaacata
taagaagcctacagagctccaaatactttggaccaaaaaagaaattcctc
ctgtcacataataattagaaaaccaaatgcacaaaacaaagaaaaatatt
aaaagcaataaagaaaaaaggtcaagtaacatataaaggcagacatatca
gaattataccagacttctcaccagagactagaaaagccagaagatgctgg
gcacatgtcatacaaccctaagagaacacaaatgtcagctcaggttacta
tgctgagcaaaactctcaactacaatagatatagaaaccaagatattcca
tgaaaaaacaaatttacacaatgtctttcaacaaatccagcctttcaaag
aataataaatggaaaactccaatacaaggagggaaacgacaccctagaaa
aagcaagaaaataatatccttttaacaaaacgaaaggaagatagccacag
aacataattccacatctaagaacaaaaataagaggaaacaacaatcactt
ttccttatatctcttaatatcaatggactcaattccccccaaa
gaattcttgcccaaagttccaaagatagtgaggaaatagaacagagtatc
tagcatccatctgcaaagagagaatacatgagttttattaggctatctgg
ggtaaaggtcatatgtctcagggttccttgcatcttgtccaggttatctc
attaaggtcctcctagtgagttatgagtgacatatacctgttggtacttt
acctaaatgtagaagaaaaaagaaaaacaacctgtttctttcttcctatt
aaatgtaagagaaaaatcatgaatgtatctcaagtcaatcctggtttagt
gattttgtgctacttgcatccaagtctaatgcttactgctgaagccagca
gtttggtcacatttgtcctaaataccacatgtttgtgtcagaaactaaca
caacctccccaacacagtgaagtgactcatcccctctacccagtttaccc
aaaaggcaaattgttttttcttttggccttgtccactctgcatagcagtg
acggtggctcttacataatttcaggctaagtcagcagtgtgcatgttgtc
atgggaaatgctagcctttgcattttctaacaacctaggaaatatgtgaa
caattcggagatggttttgtggagacaggtcaccatgataggtgatgtag
aaggccacagggcaccatttatttaaactcaaggctggaaaaagctgagg
aggaggatgaccccataggaataccagcagtctcaattaacctggactcc
tgagatctctcagacactgagtcaccaacaaggcagcatacactagcttc
tgacacatatacaacagaggactgcggcatctaacccttgagagacttta
gacatcaggagtggggaggcctggcaggatgggggggtggggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1120752
seq2: B6Ng01-107H03.b_76_236

seq1  -TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  49
       |||||||   ||||||||||| ||||||  |||| ||||||||||||||
seq2  TTTTTTTTAAAATTTTTTATTACGTATTTTCCTCAATTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  99
      |||| ||||||||||||||||      | ||||||||||||| ||| |||
seq2  CTATCCCAAAAGTCCCCCATA------CCCCCCCACTCCCCTACCCGCCC  94

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  149
      | |||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTT  144

seq1  TGCAAGTCCAATGGGCC  166
      |||||||||||||||||
seq2  TGCAAGTCCAATGGGCC  161

seq1: chr15_52538424_52539319
seq2: B6Ng01-107H03.g_67_961 (reverse)

seq1  CATCCCCACCCCCCATCCCTGCCAGGCCTCCCCACTCCCTGATGTCTAAA  50
      ||||||||||||||   ||||||||||||||||||| |||||||||||||
seq2  CATCCCCACCCCCCCATCCTGCCAGGCCTCCCCACT-CCTGATGTCTAAA  49

seq1  GTCTCTCAAGGGTTAGATGCCGCAGTCCTCTGTTGTATATGTGTCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCAAGGGTTAGATGCCGCAGTCCTCTGTTGTATATGTGTCAGAAG  99

seq1  CTAGTGTATGCTGCCTTGTTGGTGACTCAGTGTCTGAGAGATCTCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTATGCTGCCTTGTTGGTGACTCAGTGTCTGAGAGATCTCAGGAG  149

seq1  TCCAGGTTAATTGAGACTGCTGGTATTCCTATGGGGTCATCCTCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTTAATTGAGACTGCTGGTATTCCTATGGGGTCATCCTCCTCCTC  199

seq1  AGCTTTTTCCAGCCTTGAGTTTAAATAAATGGTGCCCTGTGGCCTTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTCCAGCCTTGAGTTTAAATAAATGGTGCCCTGTGGCCTTCTAC  249

seq1  ATCACCTATCATGGTGACCTGTCTCCACAAAACCATCTCCGAATTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTATCATGGTGACCTGTCTCCACAAAACCATCTCCGAATTGTTCA  299

seq1  CATATTTCCTAGGTTGTTAGAAAATGCAAAGGCTAGCATTTCCCATGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCCTAGGTTGTTAGAAAATGCAAAGGCTAGCATTTCCCATGACA  349

seq1  ACATGCACACTGCTGACTTAGCCTGAAATTATGTAAGAGCCACCGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACTGCTGACTTAGCCTGAAATTATGTAAGAGCCACCGTCACT  399

seq1  GCTATGCAGAGTGGACAAGGCCAAAAGAAAAAACAATTTGCCTTTTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCAGAGTGGACAAGGCCAAAAGAAAAAACAATTTGCCTTTTGGGT  449

seq1  AAACTGGGTAGAGGGGATGAGTCACTTCACTGTGTTGGGGAGGTTGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGTAGAGGGGATGAGTCACTTCACTGTGTTGGGGAGGTTGTGTT  499

seq1  AGTTTCTGACACAAACATGTGGTATTTAGGACAAATGTGACCAAACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGACACAAACATGTGGTATTTAGGACAAATGTGACCAAACTGCT  549

seq1  GGCTTCAGCAGTAAGCATTAGACTTGGATGCAAGTAGCACAAAATCACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGCAGTAAGCATTAGACTTGGATGCAAGTAGCACAAAATCACTA  599

seq1  AACCAGGATTGACTTGAGATACATTCATGATTTTTCTCTTACATTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGATTGACTTGAGATACATTCATGATTTTTCTCTTACATTTAATA  649

seq1  GGAAGAAAGAAACAGGTTGTTTTTCTTTTTTCTTCTACATTTAGGTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAACAGGTTGTTTTTCTTTTTTCTTCTACATTTAGGTAAAG  699

seq1  TACCAACAGGTATATGTCACTCATAACTCACTAGGAGGACCTTAATGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAGGTATATGTCACTCATAACTCACTAGGAGGACCTTAATGAGA  749

seq1  TAACCTGGACAAGATGCAAGGAACCCTGAGACATATGACCTTTACCCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGGACAAGATGCAAGGAACCCTGAGACATATGACCTTTACCCCAG  799

seq1  ATAGCCTAATAAAACTCATGTATTCTCTCTTTGCAGATGGATGCTAGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTAATAAAACTCATGTATTCTCTCTTTGCAGATGGATGCTAGATA  849

seq1  CTCTGTTCTATTTCCTCACTATCTTTGGAACTTTGGGCAAGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTCTATTTCCTCACTATCTTTGGAACTTTGGGCAAGAATTC  895