BAC Information

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BAC

Clone NameB6Ng01-114B20
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,566 - 1,121,04383,492,312 - 83,493,373
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114B20.bB6Ng01-114B20.g
ACCDH919721DH919722
length9801,050
definitionDH919721|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B20, 5' end.DH919722|Mus musculus domesticus DNA, BAC clone: B6Ng01-114B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,566 - 1,121,043)(83,492,312 - 83,493,373)
sequence
gaattcagcaatcaacaatttggaagagtatctctttttttttttttctt
tccattttttattaggtatttagctcatttacatttccaatgctatacca
aaagtcccccatacccacccacccccactcccctacccgcccactccccc
tttttggccctggcgttcccctgttctggggcatataaagtttgtgtgtc
caatgggcctctctttccagtgatggccgactaggccatcttttgataca
tatgcagctagagtcaagagctccggggcactggttagttcataatgttg
atccacctatagggttgcagatccctttagctccttgggtactttctcta
gctcctccattgggagccctgtgatccatccattagctgactgtgggcat
ccacttctgtgtttgctaggccccggcatagtctcacaagagacagctac
atctgggtcctttcgataaaatcttgctagtgtatgcaatggtgtcagcg
tttggatgctgattatggggtggatccctggataaggcagtctctacatg
gtccaccttttaatctcagctccaaactttgtctctgtaactccttccaa
gggtgtttttgttcccacttctaaggaggggcatagtgtccacacttcag
tcttcatttttcttgagtttcatgtgtttaggaaatttgtatcttatatc
ttgggtatcctaggttttgggctaaatatccacttatcagtgagtacata
ttgtgtgagttccttttgtgaaatgtgtttacctcactcaggatgatgcc
cctccaggtccatccatttggcttaggaattttcataaattcatttcttt
tttaatagctgagtaggactccattgtggtagatgtaccacattttctgt
atccattcctctgttgaggggcattctagggtctttccagcttctggcta
ttattaaataatgctgctatgaacatagtg
gaattcagcgctctttatgatcctagctacatgtgcaccgcatccttccc
gaagcttgagcaccggaaacttcagagggtaaagggtggaagtgaacagg
gaggggacagcatggagagaggaatggacactctgcttttcaggtttcaa
cttgaagaccacatggatgtctaattctatacaacatttttaaagaaaag
tatttttagtggaaataaagacatgagaattaaatatattaattgagaca
ccatgtgatatttttacccattcgaattttgtgtaaggcttgtggtgggt
ctttctgtcatctgaagccttttgtttttgttttttgtttttgtttttgt
ttttgtttttttttttcgagatagggtttctctgtgtagccctggctgtc
ctggaactcgctctgtagaccaggctggcctcaaactcagaaattcgtct
gcctctgcctcccaagtgctgggattaaaggtgtgcgccaccactcccgg
ctctgaagatttttctttatggtgtaagcgtttagggcctctcctggctt
gttacctgcgctggctctactgtgcagccttgtccagagcgtctaagctc
catgctgagcacctgcccctgcactcattcctgttctcccagcctccagt
aatagataccatgtacttcctatttctatatgaatttccccttcccttcc
atccctccaatcccttccatatgccccaactttccctcttctaaattcat
ggctgctttttctttttgagacagggattctctgtgtagccctgactatc
ctgaaacttgctctgtagaccaggctggctttgtactccaagatctttct
gcccctttctcctgggtgccccaaccataaaattatttcgttgctacttc
ataactggaatatgaattccagtgtagttatgaatcataatgtaaatgtc
tgatatgcagatatctcatatgtgaccctgtgtggtcgcttctacgggtg
agaaccgctgctctagagaaaggtggtctatgggaatatataaaatggtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120566_1121043
seq2: B6Ng01-114B20.b_75_542

seq1  TCTTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTA  50
              | ||||||||  ||||| ||||||||||||||||||||||||
seq2  --------TCTTTTTTTT--TTTTTCTTTCCATTTTTTATTAGGTATTTA  40

seq1  ACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCAC  100
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC  90

seq1  CCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCT  150
      |||||||||||| ||| ||||||||||||||||||||||||  |||||||
seq2  CCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  140

seq1  GTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTG  200
      || |||||||||||||||||||   |||||||||||||||||||||||||
seq2  GTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG  190

seq1  ATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  240

seq1  CCGGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGAT  300
      |||||| ||||||||| |||||| |||| |||||||||||||||| ||||
seq2  CCGGGGCACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGAT  290

seq1  CCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTAT  350
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGT  340

seq1  GATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCC  400
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  GATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCC  390

seq1  CCGGCATAGTCTCACAAGAGACAGCTACATCTGCCTCCTTTCAATAAAAT  450
      |||||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  CCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAAT  440

seq1  CTTGCTAGTGTATGCAATGGTGTCAGCG  478
      ||||||||||||||||||||||||||||
seq2  CTTGCTAGTGTATGCAATGGTGTCAGCG  468

seq1: chr8_83492312_83493373
seq2: B6Ng01-114B20.g_64_1113

seq1  GAATTCAGCGCTCTTTATGATCCTAGCTACATGTGCACCGCATCCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCGCTCTTTATGATCCTAGCTACATGTGCACCGCATCCTTCCC  50

seq1  GAAGCTTGAGCACCGGAAACTTCAGAGGGTAAAGGGTGGAAGTGAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGAGCACCGGAAACTTCAGAGGGTAAAGGGTGGAAGTGAACAGG  100

seq1  GAGGGGACAGCATGGAGAGAGGAATGGACACTCTGCTTTTCAGGTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACAGCATGGAGAGAGGAATGGACACTCTGCTTTTCAGGTTTCAA  150

seq1  CTTGAAGACCACATGGATGTCTAATTCTATACAACATTTTTAAAGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGACCACATGGATGTCTAATTCTATACAACATTTTTAAAGAAAAG  200

seq1  TATTTTTAGTGGAAATAAAGACATGAGAATTAAATATATTAATTGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGTGGAAATAAAGACATGAGAATTAAATATATTAATTGAGACA  250

seq1  CCATGTGATATTTTTACCCATTCGAATTTTGTGTAAGGCTTGTGGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGATATTTTTACCCATTCGAATTTTGTGTAAGGCTTGTGGTGGGT  300

seq1  CTTTCTGTCATCTGAAGCCTTTTGTTTTTGTTTTTTGTTTTTGTTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTCATCTGAAGCCTTTTGTTTTTGTTTTTTGTTTTTGTTTTTGT  350

seq1  TTTTGTTTTTTTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTTTTTCGAGATAGGGTTTCTCTGTGTAGCCCTGGCTGTC  400

seq1  CTGGAACTCGCTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATTCGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCGCTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATTCGTCT  450

seq1  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTCCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTCCCGG  500

seq1  CTCTGAAGATTTTTCTTTATGGTGTAAGCGTTTAGGGCCTCTCCTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGATTTTTCTTTATGGTGTAAGCGTTTAGGGCCTCTCCTGGCTT  550

seq1  GTTACCTGCGCTGGCTCTACTGTGCAGCCTTGTCCAGAGCGTCTAAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGCGCTGGCTCTACTGTGCAGCCTTGTCCAGAGCGTCTAAGCTC  600

seq1  CATGCTGAGCACCTGCCCCTGCACTCATTCCTGTTCTCCCAGCCTCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAGCACCTGCCCCTGCACTCATTCCTGTTCTCCCAGCCTCCAGT  650

seq1  AATAGATACCATGTACTTCCTATTTCTATATGAATTTCCCCTTCCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATACCATGTACTTCCTATTTCTATATGAATTTCCCCTTCCCTTCC  700

seq1  ATCCCTCCAATCCCTTCCATATGCCCCAACTTTCCCTCTTCTAAATTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCAATCCCTTCCATATGCCCCAACTTTCCCTCTTCTAAATTCAT  750

seq1  GGCTGCTTTTTCTTTTTGAGACAGGGATTCTCTGTGTAGCCCTGACTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTTTTCTTTTTGAGACAGGGATTCTCTGTGTAGCCCTGACTATC  800

seq1  CTGAAACTTGCTCTGTAGACCAGGCTGGCTTTGTACTCCAAGATCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTGCTCTGTAGACCAGGCTGGCTTTGTACTCCAAGATCTTTCT  850

seq1  GCCCCTTTCTCCTGGGTGCCCCCAACCATAAAATTATTTCGTTGCTACTT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCCCTTTCTCCTGGGTG-CCCCAACCATAAAATTATTTCGTTGCTACTT  899

seq1  CATAACTGGAATTATGAATTCCAGTGTAGTTATGAATCATAATGTAAATG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGAA-TATGAATTCCAGTGTAGTTATGAATCATAATGTAAATG  948

seq1  TCTGATATGCAGGATATCTCATATGTGAACCCTGTGTGGGTCGCTTCCTA  1000
      ||||||||||| ||||||||||||||| ||||||||| |||||||| |||
seq2  TCTGATATGCA-GATATCTCATATGTG-ACCCTGTGT-GGTCGCTT-CTA  994

seq1  CGGGTTGAGAACCGCTGCTCTAGAGGAAAGTGGTCTATGGGAAATTATAT  1050
      |||| |||||||||||||||||||| || ||||||||||||||  |||||
seq2  CGGG-TGAGAACCGCTGCTCTAGAGAAAGGTGGTCTATGGGAA--TATAT  1041

seq1  TAAAAAATGGTT  1062
         |||||||||
seq2  ---AAAATGGTT  1050