BAC Information

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BAC

Clone NameB6Ng01-116G11
Chromosome4 (Build37)Y (Build37)
Map Location 22,857,769 - 22,858,8811,120,659 - 1,120,705
singlet/doubletsingletsinglet
Overlap gene1700025O08Rik
Upstream gene6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
Downstream geneLOC625462, LOC383998, LOC100040464, LOC623873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G11.bB6Ng01-116G11.g
ACCDH921410DH921411
length1,09947
definitionDH921410|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G11, 5' end.DH921411|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(22,857,769 - 22,858,881)(1,120,659 - 1,120,705)
sequence
gaattcatttttaatactaatatgctgaatacagtcacattatctctcca
tgtaatttcatagtatattctttctttaatatttagaaacatcacagaca
aatatgcaggagttctacctaataaaaacttatagtagtcaattttcttt
caaagattattttaaaaatgttcttaacagcttttggctttcatatagct
caataatagaaaaagatactttcttttactgcactatacattccaggtac
tataattacaactttgcataaagcatttaatgtaattaggcatattttgt
tattttctgttttttttttcataattcatgaaactaaggattggagaatg
tttaaggtttttttccaagatccagaggtaattgcagctggcctgtatta
gctaatgagagcaaattgtgctgatatttcctcagctaacctgtttagtg
acattatgacaataacttagccatcgtgagaacttttacacaatggatat
gggcaaattctacaacttgaaatcagttactaagcatctgccgacacacc
acttccaagttcatgcaggcagtggttgcttgatttagagcccatcatac
ttagtgggacattgaactgcttcctcgaactacccaattccttacattta
ctgaatattttcctatttcaaactgctatatttgatgaatgaataaaaaa
tagtgtttctgttgtggaacaaacactaagccggagacatgcttaatgtc
atgaagcaagccattggctcttgacctctggacaataagttgatagggat
aagtttgtgtatttgatagatcttggttcctaatcacagatttagatgaa
cacatgagctgactattttacagattctctacaagctagacaaattatag
agggaaaggttattaaatgtactacagtggaaaattatacaatcaaaata
aagtttagataagactgaccatctatcactttgattggctcttgcctctc
agaacaataaaagtataagataatatccgtaaatattttatagtgtacta
catgtattgtagtatgctaaggctttctccttgggagaataatagcaaa
cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_22857769_22858881
seq2: B6Ng01-116G11.b_41_1139

seq1  GAATTCATTTTTAATACTAATATGCTGAATACAGTCACATTATCTCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTAATACTAATATGCTGAATACAGTCACATTATCTCTCCA  50

seq1  TGTAATTTCATAGTATATTCTTTCTTTAATATTTAGAAACATCACAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTCATAGTATATTCTTTCTTTAATATTTAGAAACATCACAGACA  100

seq1  AATATGCAGGAGTTCTACCTAATAAAAACTTATAGTAGTCAATTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGGAGTTCTACCTAATAAAAACTTATAGTAGTCAATTTTCTTT  150

seq1  CAAAGATTATTTTAAAAATGTTCTTAACAGCTTTTGGCTTTCATATAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTATTTTAAAAATGTTCTTAACAGCTTTTGGCTTTCATATAGCT  200

seq1  CAATAATAGAAAAAGATACTTTCTTTTACTGCACTATACATTCCAGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAGAAAAAGATACTTTCTTTTACTGCACTATACATTCCAGGTAC  250

seq1  TATAATTACAACTTTGCATAAAGCATTTAATGTAATTAGGCATATTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTACAACTTTGCATAAAGCATTTAATGTAATTAGGCATATTTTGT  300

seq1  TATTTTCTGTTTTTTTTTTCATAATTCATGAAACTAAGGATTGGAGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGTTTTTTTTTTCATAATTCATGAAACTAAGGATTGGAGAATG  350

seq1  TTTAAGGTTTTTTTCCAAGATCCAGAGGTAATTGCAGCTGGCCTGTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTTTTTTTCCAAGATCCAGAGGTAATTGCAGCTGGCCTGTATTA  400

seq1  GCTAATGAGAGCAAATTGTGCTGATATTTCCTCAGCTAACCTGTTTAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATGAGAGCAAATTGTGCTGATATTTCCTCAGCTAACCTGTTTAGTG  450

seq1  ACATTATGACAATAACTTAGCCATCGTGAGAACTTTTACACAATGGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGACAATAACTTAGCCATCGTGAGAACTTTTACACAATGGATAT  500

seq1  GGGCAAATTCTACAACTTGAAATCAGTTACTAAGCATCTGCCGACACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAATTCTACAACTTGAAATCAGTTACTAAGCATCTGCCGACACACC  550

seq1  ACTTCCAAGTTCATGCAGGCAGTGGTTGCTTGATTTAGAGCCCATCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAGTTCATGCAGGCAGTGGTTGCTTGATTTAGAGCCCATCATAC  600

seq1  TTAGTGGGACATTGAACTGCTTCCTCGAACTACCCAATTCCTTACATTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGGACATTGAACTGCTTCCTCGAACTACCCAATTCCTTACATTTA  650

seq1  CTGAATATTTTCCTATTTCAAACTGCTATATTTGATGAATGAATAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATTTTCCTATTTCAAACTGCTATATTTGATGAATGAATAAAAAA  700

seq1  TAGTGTTTCTGTTGTGGAACAAACACTAAGCCGGAGACATGCTTAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTCTGTTGTGGAACAAACACTAAGCCGGAGACATGCTTAATGTC  750

seq1  ATGAAGCAAGCCATTGGCTCTTGACCTCTGGACAATAAGTTGATAGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAAGCCATTGGCTCTTGACCTCTGGACAATAAGTTGATAGGGAT  800

seq1  AAGTTTGTGTATTTGATAGATCTTGGTTCCTAATCACAGATTTAGATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTGTATTTGATAGATCTTGGTTCCTAATCACAGATTTAGATGAA  850

seq1  CACATGAGCTGACTATTTTACAGATTCTCTACAAGCTAGACAAATTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAGCTGACTATTTTACAGATTCTCTACAAGCTAGACAAATTATAG  900

seq1  AGGGAAAGGTTATTAAATGTACTACAGTGGAAAATTATACAATCAAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGGTTATTAAATGTACTACAGTGGAAAATTATACAATCAAAATA  950

seq1  AAGTTTAGATACAGACTGACCATCTATCAACTATGATTGGCTCTTGCCTC  1000
      ||||||||||| |||||||||||||||| ||| |||||||||||||||||
seq2  AAGTTTAGATA-AGACTGACCATCTATC-ACTTTGATTGGCTCTTGCCTC  998

seq1  TTCAGGAACAATAAAAAGTATAAGATAATATCCGTTAAAATATTTTATAG  1050
       ||| ||||||| ||||||||||||||||||||||  |||||||||||||
seq2  -TCA-GAACAAT-AAAAGTATAAGATAATATCCGT--AAATATTTTATAG  1043

seq1  TGTACTACATGTATTGTAGTTATGCTTAGGGCTTTTCTCCCTTTGGGAGA  1100
      ||||||||||||||||||| |||||| |||   |||||||  ||||||||
seq2  TGTACTACATGTATTGTAG-TATGCTAAGG--CTTTCTCC--TTGGGAGA  1088

seq1  AATTAATAGCAAA  1113
      |  ||||||||||
seq2  A--TAATAGCAAA  1099

seq1: chrY_1120659_1120705
seq2: B6Ng01-116G11.g_74_120 (reverse)

seq1  CACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTG  47
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTG  47