BAC Information

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BAC

Clone NameB6Ng01-117K04
Chromosome4 (Build37)Y (Build37)
Map Location 36,018,654 - 36,019,9341,120,568 - 1,120,995
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117K04.bB6Ng01-117K04.g
ACCDH922325DH922326
length1,266500
definitionDH922325|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K04, 5' end.DH922326|Mus musculus domesticus DNA, BAC clone: B6Ng01-117K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,018,654 - 36,019,934)(1,120,568 - 1,120,995)
sequence
gaattcactcaatagtataatgtatgaaattctgtgaaacaaatgtttga
taagactcaattatagaggcatcattaaagtttggaaacaattgatgatg
cacattctctgtcccttttgttttagaatgattacaattcccgacgtcat
acagaaagagcagaaagtaactgcaatctcttactctttgtcactctcta
taacattgccctctgatgcacggttgagttgaggtgatggatgctttcag
aaccttcaaacatctctttctgaaattctatttggaaagaaggtcctcat
caagtacaagcttttaaatggagttggtgtcaaataataatgtttttctt
taatgcaaattgaaattggatgaatataaggagttaaaacaaatagtaag
ccaaggtcttatccatattacagctagccagattgaaaggattctgcaca
ggcctgagaatggtacttgtttaagaggacctaaaatgtggatacactgc
tggtgaacaacatgagaacttcaaacaaagtgaccagttagaagtgattt
ttggtcttgtaaaatcctgaaacataatcagagcataaaaatcacatact
tggatactacagctgcctccatggttcaggaaaacaggtatctatcactt
aatcctcctacctagtctgaaactcaaaacaaaatttagaaatcagggag
atactgaagcttagagcaagaaatcccattagagatgcttattcttcatt
tcatgtcttaactcctttgtgagacaccactgaataggtcccctattcaa
gatcctgcatttattatagcgttgaggaacataagagcagaaagatgagg
tagttttctctagtcactttgtgcacatatacacatatatgatatatata
tatatatatatatatcatatatgcatatgtgtatatatcatatatgtata
tacataaaaattatatattgtatatatctatgacatatgtagtgtgtata
caaaatataatcttacaaatgtaatatcttctaagtagtgtagggataaa
agcaagacttaagtgataaaattttattgttacatagaaataaaaatttg
taaatttcagtaaaaacaaagcaaatcttaatgttgaagaattcacagta
gaatactctgatagcttaaatgtttccaataatggccacatatcaaatga
taaggaaccgttcctaacaagagacctgtaagtctctaagaacaattttg
cagttttctacaacgt
gaattctatgctaaaatcatctggccctaagcttttgttttgttgggaga
ttttagtcactagatctatttccttggagtttataggactattaaaattg
ttcagatgatctcagtttaactttggtacgtgaaatctataaagaaatca
tccatttcatttagattttcccaattttgtcaatacaggcttttgaagaa
agacctaaagttttctaaagtttttttttttttttttttttttttttttt
tttttaaaacttccccagggatggccgactaggccatcttttgatacata
tgcagctagagtcaagagctccccggtactggttagttcataatgttgtt
ccacctatagggttgcagatccctttagctccttggctactttctctagc
tcctccattgggagccctgggatccatccattagctgactgtgagcatcc
acttctgtgtttgctaggccccagcatagtctcacaagaaacagctacat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_36018654_36019934
seq2: B6Ng01-117K04.b_48_1313

seq1  GAATTCACTCAATAGTATAATGTATGAAATTCTGTGAAACAAATGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAATAGTATAATGTATGAAATTCTGTGAAACAAATGTTTGA  50

seq1  TAAGACTCAATTATAGAGGCATCATTAAAGTTTGGAAACAATTGATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCAATTATAGAGGCATCATTAAAGTTTGGAAACAATTGATGATG  100

seq1  CACATTCTCTGTCCCTTTTGTTTTAGAATGATTACAATTCCCGACGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTCTGTCCCTTTTGTTTTAGAATGATTACAATTCCCGACGTCAT  150

seq1  ACAGAAAGAGCAGAAAGTAACTGCAATCTCTTACTCTTTGTCACTCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAGAGCAGAAAGTAACTGCAATCTCTTACTCTTTGTCACTCTCTA  200

seq1  TAACATTGCCCTCTGATGCACGGTTGAGTTGAGGTGATGGATGCTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGCCCTCTGATGCACGGTTGAGTTGAGGTGATGGATGCTTTCAG  250

seq1  AACCTTCAAACATCTCTTTCTGAAATTCTATTTGGAAAGAAGGTCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCAAACATCTCTTTCTGAAATTCTATTTGGAAAGAAGGTCCTCAT  300

seq1  CAAGTACAAGCTTTTAAATGGAGTTGGTGTCAAATAATAATGTTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAAGCTTTTAAATGGAGTTGGTGTCAAATAATAATGTTTTTCTT  350

seq1  TAATGCAAATTGAAATTGGATGAATATAAGGAGTTAAAACAAATAGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAATTGAAATTGGATGAATATAAGGAGTTAAAACAAATAGTAAG  400

seq1  CCAAGGTCTTATCCATATTACAGCTAGCCAGATTGAAAGGATTCTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTCTTATCCATATTACAGCTAGCCAGATTGAAAGGATTCTGCACA  450

seq1  GGCCTGAGAATGGTACTTGTTTAAGAGGACCTAAAATGTGGATACACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGAATGGTACTTGTTTAAGAGGACCTAAAATGTGGATACACTGC  500

seq1  TGGTGAACAACATGAGAACTTCAAACAAAGTGACCAGTTAGAAGTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACAACATGAGAACTTCAAACAAAGTGACCAGTTAGAAGTGATTT  550

seq1  TTGGTCTTGTAAAATCCTGAAACATAATCAGAGCATAAAAATCACATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGTAAAATCCTGAAACATAATCAGAGCATAAAAATCACATACT  600

seq1  TGGATACTACAGCTGCCTCCATGGTTCAGGAAAACAGGTATCTATCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACTACAGCTGCCTCCATGGTTCAGGAAAACAGGTATCTATCACTT  650

seq1  AATCCTCCTACCTAGTCTGAAACTCAAAACAAAATTTAGAAATCAGGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCTACCTAGTCTGAAACTCAAAACAAAATTTAGAAATCAGGGAG  700

seq1  ATACTGAAGCTTAGAGCAAGAAATCCCATTAGAGATGCTTATTCTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAAGCTTAGAGCAAGAAATCCCATTAGAGATGCTTATTCTTCATT  750

seq1  TCATGTCTTAACTCCTTTGTGAGACACCACTGAATAGGTCCCCTATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTAACTCCTTTGTGAGACACCACTGAATAGGTCCCCTATTCAA  800

seq1  GATCCTGCATTTATTATAGCGTTGAGGAACATAAGAGCAGAAAGATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCATTTATTATAGCGTTGAGGAACATAAGAGCAGAAAGATGAGG  850

seq1  TAGTTTTCTCTAGTCACTTTGTGCACATATACACATATATG----ATATA  896
      |||||||||||||||||||||||||||||||||||||||||    |||||
seq2  TAGTTTTCTCTAGTCACTTTGTGCACATATACACATATATGATATATATA  900

seq1  TATATATATATATATCATATATGCATATGTGTATATATCATATATGTATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATCATATATGCATATGTGTATATATCATATATGTATA  950

seq1  TACATATAAATTATATATTGTATAATATCTATGACATATGTAGTGGTGTA  996
      |||||| |||||||||||||||| |||||||||||||||||||| |||||
seq2  TACATAAAAATTATATATTGTAT-ATATCTATGACATATGTAGT-GTGTA  998

seq1  TACAAAATATAATCTTACAAATGTAATATC-TCTAAGTAGTGTTAGGGAT  1045
      |||||||||||||||||||||||||||||| ||||||||||| |||||||
seq2  TACAAAATATAATCTTACAAATGTAATATCTTCTAAGTAGTG-TAGGGAT  1047

seq1  ATAGGCCAGGACTAAAGTGATAAAATTTTTATTGTTACATAGAAATAAAA  1095
      | | | || |||| ||||||||||| ||||||||||||||||||||||||
seq2  AAAAG-CAAGACTTAAGTGATAAAA-TTTTATTGTTACATAGAAATAAAA  1095

seq1  ATTTGTAAATTTCAGTAAAAAACATAGCAAATCTTAAAATGTTGAAGATA  1145
      |||||||||||||||| ||||||| ||||||||||  |||||||||||  
seq2  ATTTGTAAATTTCAGT-AAAAACAAAGCAAATCTT--AATGTTGAAGAAT  1142

seq1  TCAAGGAGTTAGAATACTCTGATAAGCTAAATGTTCCCAATAAATGGCAA  1195
      |||  |   |||||||||||||||   |||||||| ||||| |||||| |
seq2  TCACAG---TAGAATACTCTGATAGCTTAAATGTTTCCAAT-AATGGCCA  1188

seq1  CATTATCAAATATGAATAAAGAGAAAACATGTCCTCTAAACAA-TGAGCT  1244
      || ||||||||    |||| |    |||   ||||   |||||  || ||
seq2  CA-TATCAAAT---GATAAGG----AACCGTTCCT---AACAAGAGACCT  1227

seq1  GTGAGTCTTCATAGAACAATTTTGCA--TTTCT-CAACCT  1281
      || |||| ||  ||||||||||||||  ||||| |||| |
seq2  GTAAGTC-TCTAAGAACAATTTTGCAGTTTTCTACAACGT  1266

seq1: chrY_1120568_1120995
seq2: B6Ng01-117K04.g_303_563

seq1  TTTTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGT  150
                                |||||     |  | ||       
seq2  --------------------------TTTTT-----TTTTTTT-------  12

seq1  ACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGAT  200
               | ||||  || |                     |||| |||
seq2  --------TTTTAAAACTTCC---------------------CCAGGGAT  33

seq1  GGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCC  250
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCC  83

seq1  GGGGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCC  300
        |||||||||||| |||||| ||||||||||||||||||||| ||||||
seq2  CCGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCC  133

seq1  CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  CTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGGGA  183

seq1  TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCC  233

seq1  GGCATAGTCTCACAAGAGACAGCTACAT  428
       |||||||||||||||| ||||||||||
seq2  AGCATAGTCTCACAAGAAACAGCTACAT  261