BAC Information

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BAC

Clone NameB6Ng01-118B02
ChromosomeY (Build37)12 (Build37)
Map Location 573,321 - 573,35865,601,811 - 65,602,959
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B02.bB6Ng01-118B02.g
ACCDH922645DH922646
length4651,130
definitionDH922645|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B02, 5' end.DH922646|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,358)(65,601,811 - 65,602,959)
sequence
gaattctttgtttattctttgttattctttgtatattctggatattatgc
actcactgataagcagatattagcccagaagttaggaatacccaagatac
aatttacaaaatcacatgaaactcaagaagaaggaagactaaaatgtgga
tactttggtccttcttagaagggggaacaagatacccatggaaagagtta
cagagacaaattgtggagcagagactgaaggaatgatcatccagagactg
acccacctagggatccatctcatatataaccaccaaacccagacactatt
gtggatgccaataagagcttgttggcaggagccttatatagctgtctcct
gagaggctctgccagtgcctgaaaaatacagaagtggatgctaacagcca
tccattggactgagtacacagtccccaatgaaggagctagggaaagtacc
caaggagctgaaggg
gaattcaaaacatcacaatagaattaatagtagcttttttagaacagaat
cagacatgatttcctagagctgagccagatcttaaagaccctcatgtagt
cttaatgtttgctggttttgtgcataatgatagagcagagtaaagggacc
tggtcaagaatgctgattcacagtctgatagtggaagagagaggactaga
ttctggtatcctgtgtcagccttgtgagactcctaaagagccctgggaga
attgtacaagaaagcaaaacaacctgaaaccaaaacaggtgcagggggaa
caaagagcactgggcaagggatctgctcaaaactggtgagacaaaggcag
tccatcaatctgcttagaaatcgtaaaatagtaacatatttctcaagtga
tgccttctggaatgtcattagcacagcttctactacatctactttcttgc
ttgtttgtagatatggtaaagtgtggcttcattttctgcatgtttatatc
ccctcaaacccagctcagtgttgggcacacagatgccagtagcttcaacc
tatttaactgctaaaacatcggccaatgtattgaattaaatatgtcattt
aaattctattcatggtttagtggaagaatatttataattcttctaaaggg
gcctaccagtgttttgatttatcctactcaatatcattctaaagattatt
tatttatttataaaatgcttgtttatgtcatcagttggggtttttgtaaa
aatcccatcaaaattaggatttagattaatataaagcaacacaattgaag
gttatggagttttatttcattaaaaacttaattttgggaaaggttattct
acacaaaatggcacatagcaatttttcagacttcaaaagcaagaaggaag
aagaatgcacacagagagctagatgccaatgaagcacttctagtttctat
gtacccacataaatgataccttttttgaaatgactagcaaagtcagtgag
atgtaaatcacatacagagcatagacccaatccagtctgtagaaaggtag
agtcagatgtttttcataaatgaatgttatgaaatgatggtctcctgtgg
gcctgactgttcataggaactttcattcgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573358
seq2: B6Ng01-118B02.b_474_511

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  38
      ||| ||||||||| |||||||||||||||||| |||||
seq2  ATGAAGGAGCTAGGGAAAGTACCCAAGGAGCTGAAGGG  38

seq1: chr12_65601811_65602959
seq2: B6Ng01-118B02.g_66_1195

seq1  GAATTCAAAACATCACAATAGAATTAATAGTAGCTTTTTTAGAACAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACATCACAATAGAATTAATAGTAGCTTTTTTAGAACAGAAT  50

seq1  CAGACATGATTTCCTAGAGCTGAGCCAGATCTTAAAGACCCTCATGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGATTTCCTAGAGCTGAGCCAGATCTTAAAGACCCTCATGTAGT  100

seq1  CTTAATGTTTGCTGGTTTTGTGCATAATGATAGAGCAGAGTAAAGGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTTTGCTGGTTTTGTGCATAATGATAGAGCAGAGTAAAGGGACC  150

seq1  TGGTCAAGAATGCTGATTCACAGTCTGATAGTGGAAGAGAGAGGACTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGAATGCTGATTCACAGTCTGATAGTGGAAGAGAGAGGACTAGA  200

seq1  TTCTGGTATCCTGTGTCAGCCTTGTGAGACTCCTAAAGAGCCCTGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTATCCTGTGTCAGCCTTGTGAGACTCCTAAAGAGCCCTGGGAGA  250

seq1  ATTGTACAAGAAAGCAAAACAACCTGAAACCAAAACAGGTGCAGGGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACAAGAAAGCAAAACAACCTGAAACCAAAACAGGTGCAGGGGGAA  300

seq1  CAAAGAGCACTGGGCAAGGGATCTGCTCAAAACTGGTGAGACAAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCACTGGGCAAGGGATCTGCTCAAAACTGGTGAGACAAAGGCAG  350

seq1  TCCATCAATCTGCTTAGAAATCGTAAAATAGTAACATATTTCTCAAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAATCTGCTTAGAAATCGTAAAATAGTAACATATTTCTCAAGTGA  400

seq1  TGCCTTCTGGAATGTCATTAGCACAGCTTCTACTACATCTACTTTCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTGGAATGTCATTAGCACAGCTTCTACTACATCTACTTTCTTGC  450

seq1  TTGTTTGTAGATATGGTAAAGTGTGGCTTCATTTTCTGCATGTTTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTAGATATGGTAAAGTGTGGCTTCATTTTCTGCATGTTTATATC  500

seq1  CCCTCAAACCCAGCTCAGTGTTGGGCACACAGATGCCAGTAGCTTCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACCCAGCTCAGTGTTGGGCACACAGATGCCAGTAGCTTCAACC  550

seq1  TATTTAACTGCTAAAACATCGGCCAATGTATTGAATTAAATATGTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACTGCTAAAACATCGGCCAATGTATTGAATTAAATATGTCATTT  600

seq1  AAATTCTATTCATGGTTTAGTGGAAGAATATTTATAATTCTTCTAAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTATTCATGGTTTAGTGGAAGAATATTTATAATTCTTCTAAAGGG  650

seq1  GCCTACCAGTGTTTTGATTTATCCTACTCAATATCATTCTAAAGATTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACCAGTGTTTTGATTTATCCTACTCAATATCATTCTAAAGATTATT  700

seq1  TATTTATTTATAAAATGCTTGTTTATGTCATCAGTTGGGGTTTTTGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATAAAATGCTTGTTTATGTCATCAGTTGGGGTTTTTGTAAA  750

seq1  AATCCCATCAAAATTAGGATTTAGATTAATATAAAGCAACACAATTGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATCAAAATTAGGATTTAGATTAATATAAAGCAACACAATTGAAG  800

seq1  GTTATGGAGTTTTATTTCATTAAAAACTTAATTTTGGGAAAGGTTATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAGTTTTATTTCATTAAAAACTTAATTTTGGGAAAGGTTATTCT  850

seq1  ACACAAAAATGGCACATAGCAATTTTTCAGACTTCAAAAGCAAGAAGGAA  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAC-AAAATGGCACATAGCAATTTTTCAGACTTCAAAAGCAAGAAGGAA  899

seq1  GAAGAATGCACACAGAGAGCTAGATGCCAATGAAGCACTTCTAGTTTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGCACACAGAGAGCTAGATGCCAATGAAGCACTTCTAGTTTCTA  949

seq1  TGGTAACCAACATAAATGAATACCTTTTTTGAAAATGAACTAGCAAAGTC  1000
      ||   ||| ||||||||| |||||||||||| ||||| ||||||||||||
seq2  TG--TACCCACATAAATG-ATACCTTTTTTG-AAATG-ACTAGCAAAGTC  994

seq1  AGTGAGATGTAAATTCACAAATACAGAAACATAAGACCCAATCCAGTTCT  1050
      ||||||||||||||   || |||||| | ||| ||||||||||||| |||
seq2  AGTGAGATGTAAAT---CACATACAG-AGCAT-AGACCCAATCCAG-TCT  1038

seq1  GTAGACA-GTAGGAAGTTCAGATGTTTTTCATAAATGGAATTGTTTATGA  1099
      ||||| | ||||  || ||||||||||||||||||| ||||   ||||| 
seq2  GTAGAAAGGTAG--AG-TCAGATGTTTTTCATAAAT-GAAT--GTTATG-  1081

seq1  AAATGTATGTCT-CTGTGGGGCTGACTGTTCATAGGACTTTTTAAATTCG  1148
      |||||   |||| ||||||| ||||||||||||||||  |||   |||||
seq2  AAATGATGGTCTCCTGTGGGCCTGACTGTTCATAGGAACTTT--CATTCG  1129

seq1  C  1149
      |
seq2  C  1130