BAC Information

Click to search

BAC

Clone NameB6Ng01-118B03
Chromosome13 (Build37)Y (Build37)
Map Location 60,955,445 - 60,956,608573,321 - 573,537
singlet/doubletsingletsinglet
Overlap gene4930486L24Rik
Upstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665, 2310051M13Rik
Downstream geneTpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B03.bB6Ng01-118B03.g
ACCDH922647DH922648
length1,164326
definitionDH922647|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B03, 5' end.DH922648|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,955,445 - 60,956,608)(573,321 - 573,537)
sequence
gaattcattcatttcatggtatggccataatacaaagatacataaataca
caaagcttggaaactcagttatgtcaaatgatttttttgatggggcacac
aggtgaaaggatgtcttgctaaatcagacaaaggaatgttttcctgaagc
agacacaggtgaaagggtattttgatgtagcagacacttgaaaagatact
tgatgaacgagtacaagtatgaccccacagacagtgggggcactgagcat
tggtttggtttgctctgcctcgctattcactaataaaactcatgtattgg
ttcaccttacatagcgttgttgaggtatgtaatgccacaattgagagaaa
ctcacccaagaactgctcgtgaaattcctgtggcagcttgcctctcccac
atcttcccgccccctgaggctggttggtaagccctgtgggtggtttcctc
agtattgaactacagcccctggttcgtgcttgctgtctgcctgcttagag
gactggtctgcagttgctgagtcatatttggtgtttgctacgggactgaa
ctgctgcctcagaaggttgagctcaccaccaaagaactattgctccccat
atcctaataacttttctcttccactgcttctgctgagtagtgggctacag
gagaggttgaacgcttattaagagcatgttgcaaaaagttatgcctacaa
ttgtctgtgggaattttcatgttactaaccacattgtatgcttttccatg
ttttgtcctccattcattccattgaacatccaaactgggatctagtgttg
gagcagttgagtcgatttccaagcagaggatggctaggaagagaacagcg
atcatgtctcatccacctagagaaaaagacatgagattctgattacatta
gtgattcagaaaacctttcttatccatacttagaaattactatcataatg
gtgtagcaaaattattaaaactgttcttctaaagaatgtagtatgagaaa
agttaagatctgtttgttttaaagcagacacacagagaaattttgtttat
tcactaaaccgaatagtaaccggcttagctcatcacaagggtgtgatcac
tttgtggttcgaaactttaaagcaaagacttcagaactagttggctcaga
ctttgtggccattg
actgaaagaaccctgatatagctgtctcttgtgaggctaagccggggcct
agcaaacacagaagaggatgctcagagtcagctattggatggatcacaga
gcccccaatggaggagctagagaaagtacccaaggagctaaaggggtctg
caaccctataggtggaacaacaatatgaactaaccagtaccccccagagc
ttgtgtctctagctgcatatgtatcagaagatgacctagtcggccatcaa
ttgaaagagaggaccattggtcttgcaaacttaatatccctcagtatagg
ggaacaccagggccatgaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60955445_60956608
seq2: B6Ng01-118B03.b_48_1211

seq1  GAATTCATTCATTTCATGGTATGGCCATAATACAAAGATACATAAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTTCATGGTATGGCCATAATACAAAGATACATAAATACA  50

seq1  CAAAGCTTGGAAACTCAGTTATGTCAAATGATTTTTTTGATGGGGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGGAAACTCAGTTATGTCAAATGATTTTTTTGATGGGGCACAC  100

seq1  AGGTGAAAGGATGTCTTGCTAAATCAGACAAAGGAATGTTTTCCTGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAGGATGTCTTGCTAAATCAGACAAAGGAATGTTTTCCTGAAGC  150

seq1  AGACACAGGTGAAAGGGTATTTTGATGTAGCAGACACTTGAAAAGATACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAGGTGAAAGGGTATTTTGATGTAGCAGACACTTGAAAAGATACT  200

seq1  TGATGAACGAGTACAAGTATGACCCCACAGACAGTGGGGGCACTGAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACGAGTACAAGTATGACCCCACAGACAGTGGGGGCACTGAGCAT  250

seq1  TGGTTTGGTTTGCTCTGCCTCGCTATTCACTAATAAAACTCATGTATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGGTTTGCTCTGCCTCGCTATTCACTAATAAAACTCATGTATTGG  300

seq1  TTCACCTTACATAGCGTTGTTGAGGTATGTAATGCCACAATTGAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTACATAGCGTTGTTGAGGTATGTAATGCCACAATTGAGAGAAA  350

seq1  CTCACCCAAGAACTGCTCGTGAAATTCCTGTGGCAGCTTGCCTCTCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCAAGAACTGCTCGTGAAATTCCTGTGGCAGCTTGCCTCTCCCAC  400

seq1  ATCTTCCCGCCCCCTGAGGCTGGTTGGTAAGCCCTGTGGGTGGTTTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCGCCCCCTGAGGCTGGTTGGTAAGCCCTGTGGGTGGTTTCCTC  450

seq1  AGTATTGAACTACAGCCCCTGGTTCGTGCTTGCTGTCTGCCTGCTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGAACTACAGCCCCTGGTTCGTGCTTGCTGTCTGCCTGCTTAGAG  500

seq1  GACTGGTCTGCAGTTGCTGAGTCATATTTGGTGTTTGCTACGGGACTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTCTGCAGTTGCTGAGTCATATTTGGTGTTTGCTACGGGACTGAA  550

seq1  CTGCTGCCTCAGAAGGTTGAGCTCACCACCAAAGAACTATTGCTCCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTCAGAAGGTTGAGCTCACCACCAAAGAACTATTGCTCCCCAT  600

seq1  ATCCTAATAACTTTTCTCTTCCACTGCTTCTGCTGAGTAGTGGGCTACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAATAACTTTTCTCTTCCACTGCTTCTGCTGAGTAGTGGGCTACAG  650

seq1  GAGAGGTTGAACGCTTATTAAGAGCATGTTGCAAAAAGTTATGCCTACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTGAACGCTTATTAAGAGCATGTTGCAAAAAGTTATGCCTACAA  700

seq1  TTGTCTGTGGGAATTTTCATGTTACTAACCACATTGTATGCTTTTCCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTGGGAATTTTCATGTTACTAACCACATTGTATGCTTTTCCATG  750

seq1  TTTTGTCCTCCATTCATTCCATTGAACATCCAAACTGGGATCTAGTGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTCCATTCATTCCATTGAACATCCAAACTGGGATCTAGTGTTG  800

seq1  GAGCAGTTGAGTCGATTTCCAAGCAGAGGATGGCTAGGAAGAGAACAGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTGAGTCGATTTCCAAGCAGAGGATGGCTAGGAAGAGAACAGCG  850

seq1  ATCATGTCTCATCCACCTAGAGAAAAAGACATGAGATTCTGATTACATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCTCATCCACCTAGAGAAAAAGACATGAGATTCTGATTACATTA  900

seq1  GTGATTCAGAAAACC-TTCTTATCCATACTTAGAAATTACTATCATAATG  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTGATTCAGAAAACCTTTCTTATCCATACTTAGAAATTACTATCATAATG  950

seq1  GTGTAGCAAAATTATTAAAACTGTTCTTCTAAAGAATGTAGTATGAGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCAAAATTATTAAAACTGTTCTTCTAAAGAATGTAGTATGAGAAA  1000

seq1  AGTTAAAGATCTGTTTGTCTTAAAGCAGACACACAGAGGAATTTTGTTTA  1049
      |||| ||||||||||||| ||||||||||||||||||| |||||||||||
seq2  AGTT-AAGATCTGTTTGTTTTAAAGCAGACACACAGAGAAATTTTGTTTA  1049

seq1  TTCACTAAACCGAATAGTAACCGGCTTAGCTCATCAC-AGGGTGTGGATT  1098
      ||||||||||||||||||||||||||||||||||||| ||||||||   |
seq2  TTCACTAAACCGAATAGTAACCGGCTTAGCTCATCACAAGGGTGTG--AT  1097

seq1  CACTTTGTGGTTCAGAACTTTAAAGCAAAGACTTCAGACATAGTTGGCTC  1148
      |||||||||||||  |||||||||||||||||||||||  ||||||||||
seq2  CACTTTGTGGTTCGAAACTTTAAAGCAAAGACTTCAGAACTAGTTGGCTC  1147

seq1  AGACTTTGT-GCCATTG  1164
      ||||||||| |||||||
seq2  AGACTTTGTGGCCATTG  1164

seq1: chrY_573321_573537
seq2: B6Ng01-118B03.g_181_399

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAGAGCTCATGTC  98
      |||| ||||||||||||||||| |||||||||  || |||||||  ||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
      |||||||||||||||||||||||||| |||||| |||||||| | | |||
seq2  TCTAGCTGCATATGTATCAGAAGATGACCTAGTCGGCCATCAATTGAAAG  150

seq1  AGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACAC  198
      ||||| || |||||||||||||||| |||| || ||||| ||||||||||
seq2  AGAGGACCATTGGTCTTGCAAACTTAATATCCCTCAGTATAGGGGAACAC  200

seq1  CAGGGCCAAGAAGTGGGAG  217
      |||||||| ||||||||||
seq2  CAGGGCCATGAAGTGGGAG  219