BAC Information

Click to search

BAC

Clone NameB6Ng01-118M06
Chromosome5 (Build37)Y (Build37)
Map Location 42,192,450 - 42,193,6031,870,346 - 1,870,575
singlet/doubletsingletsinglet
Overlap geneA230054D04Rik
Upstream geneLOC208522, Rab28, Bapx1
Downstream geneLOC384308, LOC100040588, EG636612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M06.bB6Ng01-118M06.g
ACCDH923159DH923160
length1,140348
definitionDH923159|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M06, 5' end.DH923160|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,192,450 - 42,193,603)(1,870,346 - 1,870,575)
sequence
gaattcctccacatctccagagttctcttcctgtagagaagttgaacaag
accagtggtttcattttcaaattttttttaattaggtattttcctcattt
acatttccaatgctatcccaaaagtcccccatattccccccctcccccca
ctcccctacccatccactcccactttttggccctggtgttcccctgtact
ggggcatatacagtttgtaagtccaatgggcctctctttccagtgatggc
cgactaggccatcttttgatacatatgcagctagagtcaagagctacagg
gtactggttagttcatactgttgttccacctatagggttgcagatccctt
tagctccttgggtactttctctagctcctccattgggggccctgtgatcc
atccattagctgactgtgagcatccacttctgtgtttgctaggcccctca
ttttcaaatttgactctgcattcattcacacttccgtgagttcctctcaa
taacaatttcctatttgacacttagaatcctatttgacatttagaatagt
ttgataaatgtttttttaaaaatataaccatcattgcagttactggaact
gttaaaagaagataacaaaaactgaaggcagaaaagcagatgtagataca
aaataccaaggttaggtttagttttattttcttcctacaaaatgtacttt
gtccatttaagagaaactccaaaggaagaaatactctaaattgcatttct
ttacggagtggcagaggagaggggtatagggaaagagaaagggggaatat
gtcaaaaggacatctggggatttagttgaactaatttatagtagtatcct
ctagcaggtaaattattcatcagtagctgaaaaacgttttgagctcaaaa
tgtcaagtgaaccctgaaagctagagtaacaactaggctagcaagacatg
cccacagtgtaaccactttctgattaaagtccactctgcaaatgaaactc
atacttggaactatttgctggaccagaactggtgactggagcaaactagt
tttcatgttcatactatttctgctaatagacacagtattaaatgactcta
attgactaatgtccatcccatatgcatctctcaccctcat
tttgtttagctctgagccccattttttaatggagttatttgattttctgc
ctagcaaacacataagtggatgctcacagtcagctattggatggatcaca
gggcccccaatggaggagctagagaaagtacccaaggagctaaaaggatc
tgcaaccctataggtggaacagcattatgaaataaccagtagccctgagc
tcttgactctagctgcatatgtattaaaagatggcctagtcgcccatcac
ctgaaagagaggccaattggacatgcaaactttatatgtcccagtacagg
ggaacaccagggccaaaaagtaggagtgggtgggtaggggaatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_42192450_42193603
seq2: B6Ng01-118M06.b_46_1185

seq1  GAATTCCTCCACATCTCCAGAGTTCTCTTCCTGTAGAGAAGTTGAACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACATCTCCAGAGTTCTCTTCCTGTAGAGAAGTTGAACAAG  50

seq1  ACCAGTGGTTTCATTTTCAAATTTTTTTTAATTAGGTATTTTCCTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGGTTTCATTTTCAAATTTTTTTTAATTAGGTATTTTCCTCATTT  100

seq1  ACATTTCCAATGCTATCCCAAAAGTCCCCCATATTCCCCCCCTCCCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCCAATGCTATCCCAAAAGTCCCCCATATTCCCCCCCTCCCCCCA  150

seq1  CTCCCCTACCCATCCACTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTACCCATCCACTCCCACTTTTTGGCCCTGGTGTTCCCCTGTACT  200

seq1  GGGGCATATACAGTTTGTAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATATACAGTTTGTAAGTCCAATGGGCCTCTCTTTCCAGTGATGGC  250

seq1  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTACAGG  300

seq1  GTACTGGTTAGTTCATACTGTTGTTCCACCTATAGGGTTGCAGATCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGTTAGTTCATACTGTTGTTCCACCTATAGGGTTGCAGATCCCTT  350

seq1  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCC  400

seq1  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCTCA  450

seq1  TTTTCAAATTTGACTCTGCATTCATTCACACTTCCGTGAGTTCCTCTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAATTTGACTCTGCATTCATTCACACTTCCGTGAGTTCCTCTCAA  500

seq1  TAACAATTTCCTATTTGACACTTAGAATCCTATTTGACATTTAGAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTTCCTATTTGACACTTAGAATCCTATTTGACATTTAGAATAGT  550

seq1  TTGATAAATGTTTTTTTAAAAATATAACCATCATTGCAGTTACTGGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATGTTTTTTTAAAAATATAACCATCATTGCAGTTACTGGAACT  600

seq1  GTTAAAAGAAGATAACAAAAACTGAAGGCAGAAAAGCAGATGTAGATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAGAAGATAACAAAAACTGAAGGCAGAAAAGCAGATGTAGATACA  650

seq1  AAATACCAAGGTTAGGTTTAGTTTTATTTTCTTCCTACAAAATGTACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCAAGGTTAGGTTTAGTTTTATTTTCTTCCTACAAAATGTACTTT  700

seq1  GTCCATTTAAGAGAAACTCCAAAGGAAGAAATACTCTAAATTGCATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTAAGAGAAACTCCAAAGGAAGAAATACTCTAAATTGCATTTCT  750

seq1  TTACGGAGTGGCAGAGGAGAGGGGTATAGGGAAAGAGAAAGGGGGAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGAGTGGCAGAGGAGAGGGGTATAGGGAAAGAGAAAGGGGGAATAT  800

seq1  GTCAAAAGGACATCTGGGGATTTAGTTGAACTAATTTATAGTAGTATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAGGACATCTGGGGATTTAGTTGAACTAATTTATAGTAGTATCCT  850

seq1  CTAGCAGGTAAATTATTCATCAGTAGCTGAAAAACGTTTTGAGCTCAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGGTAAATTATTCATCAGTAGCTGAAAAACGTTTTGAGCTCAAAA  900

seq1  TGTCAAGTGAACCCTGAAAGCTAGAGTAACAACTAGGCTAGCAAGACATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTGAACCCTGAAAGCTAGAGTAACAACTAGGCTAGCAAGACATG  950

seq1  CCCACAGGTGTAACCACTTTCTGATTAAAGTCCCACTCTGCAAAATGAAA  1000
      |||||| |||||||||||||||||||||||| ||||||||| ||||||||
seq2  CCCACA-GTGTAACCACTTTCTGATTAAAGT-CCACTCTGC-AAATGAAA  997

seq1  CTCATACTTGGAACTATTTGCTGGACCAAGAACTTGTGACTGGAGCAAAC  1050
      ||||||||||||||||||||||||||| |||||| |||||||||||||| 
seq2  CTCATACTTGGAACTATTTGCTGGACC-AGAACTGGTGACTGGAGCAAA-  1045

seq1  CTAGTTTTTCCATGTTTCATACTATTTCTGCTAAATAGACACAGTATTAA  1100
      ||||||||  |||| ||||||||||||||||| |||||||||||||||||
seq2  CTAGTTTT--CATG-TTCATACTATTTCTGCT-AATAGACACAGTATTAA  1091

seq1  ATTGACTCCTAATGACTTAATGTCATACCCATAAATGCATCTCTCAACCC  1150
      | ||||||  | |||| |||||||   |||||  ||||||||||| ||||
seq2  A-TGACTCTAATTGAC-TAATGTCCATCCCAT--ATGCATCTCTC-ACCC  1136

seq1  TCAT  1154
      ||||
seq2  TCAT  1140

seq1: chrY_1870346_1870575
seq2: B6Ng01-118M06.g_194_423

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAAGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      ||| ||||||||| |||||| || |||||||||||||||||| |||||||
seq2  ACAGCATTATGAAATAACCAGTAGCCCTGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||| ||||||||||||||||| |||||||  |||||||||||| |||
seq2  ATGTATTAAAAGATGGCCTAGTCGCCCATCACCTGAAAGAGAGGCCAATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAA  200
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  GGACATGCAAACTTTATATGTCCCAGTACAGGGGAACACCAGGGCCAAAA  200

seq1  AGGGGCAGTGGGTGGGTAGGGGAGTGGGGG  230
      ||  | ||||||||||||||||| ||||||
seq2  AGTAGGAGTGGGTGGGTAGGGGAATGGGGG  230