BAC Information

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BAC

Clone NameB6Ng01-119L24
Chromosome8 (Build37)Y (Build37)
Map Location 61,319,049 - 61,320,2611,870,346 - 1,870,572
singlet/doubletsingletsinglet
Overlap gene4930431L04Rik
Upstream genenone
Downstream geneBC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119L24.bB6Ng01-119L24.g
ACCDH923879DH923880
length1,206347
definitionDH923879|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L24, 5' end.DH923880|Mus musculus domesticus DNA, BAC clone: B6Ng01-119L24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,319,049 - 61,320,261)(1,870,346 - 1,870,572)
sequence
gaattctttcagttgtgataagctggggagaagaaaagaggatcatatca
tatgaaaccagattgtcctcttctatcccaaataaaatatcatatgatct
tgctattgttattcattacttgacaaaatctagaagaatctagaaaatat
gtctcttgataaggttacaggagagtagaatgccttgattacatgacata
aactgatatgggaagtcctcaatttaattgaaatgaaaacatatgtacac
ttccatcaagtcttggattaggataatttcttgctggatcatacaatgta
agtagaaatttttaaatctatattttacttttaaattaaacagctaagct
taattaatttataagttgctcaattacactgttatgaatatgtgcagtag
tcttttgtcaacacttgttctccctaggtaacactaataccttagacaag
tctctgttttttaattgcatcttcatctatgcatgtatttaaatttcaaa
cattaacttcatgtgctgcacaacattggccatacaacttaatatctttg
taactctttcatctttaatataaacataggaagatttggtattatcccct
gtaataactggattatttttaagattaaattatcaaaggcatgtgataga
cataaatggtcacaaggaacttggtagtaatcagagccacctttttcatt
ggtgaataatcagtatagcagtgagatctccccacgcttcagtaagagca
tagtagccctagactaaaatgaaaagcacatccaggataatttggtagcc
aagaccccttttggactaagagagaagattgcaatatggtgtaatagagg
acatcacatttactgagaactaactacaaaggttatgaaataaaacttct
taagagataaaaaaagactgttttatttaactaggtcaacaaaaagtatg
tcttctaaaggtaaatagttgagcagcatttgaacatgctgtgatattgt
agactgttgactttaggagataaaacatgatatcacaataatcatattta
aatcctcaatgtcgatttatcactgtatttaagagaactaggatctgggt
aagaaagaatatgctgagaaatttaacagaaacaggtgcatagcaattta
ctcagccatgcattattggttaacattgtgcattctcgaagaaaaacaca
aggggc
caaagtgtggatacattgatccttcttagaagggcagatactaggccggg
gcctagcaaacacagaagtggatgctcacagtcaactattggatggatca
cagggcccccaatggaggaactagagaaagtatctaaggagctacttaag
agatctgcaaccctgtaggtgcaacattatgaactaaccagtaccccgga
gctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatc
actggaaagagaggcccattggacacacaaactttatatgccccagtaca
ggggaatgccagggccaaaaaatgggaatgggtgggtaggggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_61319049_61320261
seq2: B6Ng01-119L24.b_49_1254

seq1  GAATTCTTTCAGTTGTGATAAGCTGGGGAGAAGAAAAGAGGATCATATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTTGTGATAAGCTGGGGAGAAGAAAAGAGGATCATATCA  50

seq1  TATGAAACCAGATTGTCCTCTTCTATCCCAAATAAAATATCATATGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAACCAGATTGTCCTCTTCTATCCCAAATAAAATATCATATGATCT  100

seq1  TGCTATTGTTATTCATTACTTGACAAAATCTAGAAGAATCTAGAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGTTATTCATTACTTGACAAAATCTAGAAGAATCTAGAAAATAT  150

seq1  GTCTCTTGATAAGGTTACAGGAGAGTAGAATGCCTTGATTACATGACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGATAAGGTTACAGGAGAGTAGAATGCCTTGATTACATGACATA  200

seq1  AACTGATATGGGAAGTCCTCAATTTAATTGAAATGAAAACATATGTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATATGGGAAGTCCTCAATTTAATTGAAATGAAAACATATGTACAC  250

seq1  TTCCATCAAGTCTTGGATTAGGATAATTTCTTGCTGGATCATACAATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAAGTCTTGGATTAGGATAATTTCTTGCTGGATCATACAATGTA  300

seq1  AGTAGAAATTTTTAAATCTATATTTTACTTTTAAATTAAACAGCTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAATTTTTAAATCTATATTTTACTTTTAAATTAAACAGCTAAGCT  350

seq1  TAATTAATTTATAAGTTGCTCAATTACACTGTTATGAATATGTGCAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTATAAGTTGCTCAATTACACTGTTATGAATATGTGCAGTAG  400

seq1  TCTTTTGTCAACACTTGTTCTCCCTAGGTAACACTAATACCTTAGACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTCAACACTTGTTCTCCCTAGGTAACACTAATACCTTAGACAAG  450

seq1  TCTCTGTTTTTTAATTGCATCTTCATCTATGCATGTATTTAAATTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTTTTAATTGCATCTTCATCTATGCATGTATTTAAATTTCAAA  500

seq1  CATTAACTTCATGTGCTGCACAACATTGGCCATACAACTTAATATCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTTCATGTGCTGCACAACATTGGCCATACAACTTAATATCTTTG  550

seq1  TAACTCTTTCATCTTTAATATAAACATAGGAAGATTTGGTATTATCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCATCTTTAATATAAACATAGGAAGATTTGGTATTATCCCCT  600

seq1  GTAATAACTGGATTATTTTTAAGATTAAATTATCAAAGGCATGTGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAACTGGATTATTTTTAAGATTAAATTATCAAAGGCATGTGATAGA  650

seq1  CATAAATGGTCACAAGGAACTTGGTAGTAATCAGAGCCACCTTTTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGGTCACAAGGAACTTGGTAGTAATCAGAGCCACCTTTTTCATT  700

seq1  GGTGAATAATCAGTATAGCAGTGAGATCTCCCCACGCTTCAGTAAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATAATCAGTATAGCAGTGAGATCTCCCCACGCTTCAGTAAGAGCA  750

seq1  TAGTAGCCCTAGACTAAAATGAAAAGCACATCCAGGATAATTTGGTAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCCCTAGACTAAAATGAAAAGCACATCCAGGATAATTTGGTAGCC  800

seq1  AAGACCCCTTTTGGACTAAGAGAGAAGATTGCAATATGGTGTAATAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCTTTTGGACTAAGAGAGAAGATTGCAATATGGTGTAATAGAGG  850

seq1  ACATCACATTTACTGAGAACTAACTACAAAGGTTATGAAATAAAACTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACATTTACTGAGAACTAACTACAAAGGTTATGAAATAAAACTTCT  900

seq1  TAAGAGATAAAAAAAAGACTGTTTTATTTAACTAGGTCAACAAAAAGTAT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  TAAGAGAT-AAAAAAAGACTGTTTTATTTAACTAGGTCAACAAAAAGTA-  948

seq1  TGTCTTCTAAAGGTAAATAGGTTGAGCAGCATTTGAACATTGCTGTGATA  1000
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  TGTCTTCTAAAGGTAAATA-GTTGAGCAGCATTTGAACA-TGCTGTGATA  996

seq1  TTGTAGACTGTTGACTTTAGGAGATAAAACATGGATATCACAATAATCAT  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TTGTAGACTGTTGACTTTAGGAGATAAAACAT-GATATCACAATAATCA-  1044

seq1  TATTTAAATCCTCAATGTCGATTTTATCACTGTATTTAAGAGAACTAGGA  1100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATTTAAATCCTCAATGTCGA-TTTATCACTGTATTTAAGAGAACTAGGA  1093

seq1  TCTGGGTAAG-AAGGATATGCTGAG-AATTTAACAGAAACAGGTGCATAA  1148
      |||||||||| ||| |||||||||| |||||||||||||||||||||| |
seq2  TCTGGGTAAGAAAGAATATGCTGAGAAATTTAACAGAAACAGGTGCAT-A  1142

seq1  GCATTTAACTCCAGCCATGCATTATTTTGTAACATATGTGCA-TCTCAGA  1197
      ||| || ||| |||||||||||||||   |||||| |||||| ||||  |
seq2  GCAATTTACT-CAGCCATGCATTATTGGTTAACAT-TGTGCATTCTCGAA  1190

seq1  AAGAAAAACAAGGGGC  1213
       | ||| |||||||||
seq2  GAAAAACACAAGGGGC  1206

seq1: chrY_1870346_1870572
seq2: B6Ng01-119L24.g_192_418

seq1  CTAGAGAAAGTACCCAAGGAGCTA---AAGGGATCTGCAACCCTATAGGT  47
      |||||||||||| | |||||||||   ||| ||||||||||||| |||||
seq2  CTAGAGAAAGTATCTAAGGAGCTACTTAAGAGATCTGCAACCCTGTAGGT  50

seq1  GGAACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTG  97
      |   ||||||||||||||||||| |||||| |||||||||||||| ||||
seq2  G---CAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTG  97

seq1  CATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  147
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCC  147

seq1  ATTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCA  197
      ||||||||  ||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGGACACACAAACTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCA  197

seq1  AAAAGGGGCAGTGGGTGGGTAGGGGAGTGG  227
      ||||  || | |||||||||||||||||||
seq2  AAAAATGGGAATGGGTGGGTAGGGGAGTGG  227