BAC Information

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BAC

Clone NameB6Ng01-121B17
ChromosomeY (Build37)4 (Build37)
Map Location 1,120,579 - 1,120,75430,425,235 - 30,426,473
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121B17.bB6Ng01-121B17.g
ACCDH924874DH924875
length8661,221
definitionDH924874|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B17, 5' end.DH924875|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,579 - 1,120,754)(30,425,235 - 30,426,473)
sequence
gaattctattccactggtctacttgtctgtcctataccagtaccatgaag
tttttatcacaattgctctgtagtacagctttaggtcaggcatggtcatt
ccaacagaggtttttttatccttgagaagagtttttgctgtcctaggttt
ttgttattcaagatgaatttgcagattgttcattctaattcgttgaagaa
ttgagttggaattttgatggggattgcattgaatctgtagattgcttttg
gcaagatagccatttttactatattgatcctgccaatccatgagcatggg
agatctttccatcttctgagatcttcttttttttttttttccatttttta
ttaggtatttagctcatttacatttccaatgctataccaaaagaccccct
tacccacccacccccactcccctacccacccactccccccctttggccct
ggcgttcccctgtaccggggcacacaaagtctgcgtgtccaatgggcctc
tctttccagtgatggccgactaggccatcttttgatacatatgcagctag
agtcaagagctcaggggtactggttagttcataatgttgttccacctata
gggttgaagatccctttagctcctttgggtactttctctagctcctccat
ttgggagccctgttgatccatccattagctgactgtgagcatccacttct
gtgtttgctaggccccggcatagtctcacaagagacagctacatctgggt
ccttttcagtaaatcttgctagtgtatgcaatggtgtcagcattttggaa
gctgattatggggtggatccctggatatggcagtctctacatggtccatc
ctttcatctcagctcc
gaattcacacattcacttcattgctgcatgcccagacccaatacaggaaa
gcccgatgtaaactttgagttctgtctttaaccaagaaaattggtccaaa
gctaaatcctaccttgaaaggttactatgtctatctgttttaattctgaa
acaaccagagatctcaatggaaatatgtattaagtgatgcatgcattaat
ccaggacagattgaaggtgcgacacaatctacatctactgcttttgttta
tttcagtgtgcagtggtgatttcctgaagctttctcttactcaaaccttg
cattagaaaatggcatgtaattatgagtaatcaagttcctttcctttaat
aatttgaacatctaggatagaacaaaaatcattgtttccagtgtacttgg
tttttaaagtactgaccaaataaaacataaagaaagcactaacgatggca
aaatctaagccccagacagcatctaccatgactattgtcttttcccttga
actcaaaaacactcctcatacagaaggtgctcaaatgtcacttccaaagt
tgatcatattttatccattggatctgtgtacccattaaatttttgtttca
ttctaaccccagagaaagtttgtctcaggaactgctttattaatggtaga
tttcttgttactaggaatctttatatagttttaaacgtcttctaaaagca
ataagtttgctagtgatataaatatttacctttagtgtactcaaacgaga
aagcacatataagattctacgggtgctatagcaatacagcagatatacgt
cttcattaacatattatctttgtaaagaatggtctggttagtacatagtt
tgttaaaatagtgcaatgttactgacacagtattactgaatgagatcatg
ctttgatacaatgagtatctaggaatgtaaagtagaacagttcccatttt
atctttccctgacttcaggcaaatattgcacgttcatcagatagcctcaa
taagtttctgtgaaaagtagttctttgaaaaatatcaacgaaaagtggaa
attgtcattataagtcttctataatttatacgtggtttgaatataggtga
ggttaaaatgagtttttccttgccctcatataaacaagaactccctcttt
ataggggattctcgtcaagtaacctcttatccggtagtctataccatcta
cccgtgtaacttaacaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120579_1120754
seq2: B6Ng01-121B17.b_374_547

seq1  TTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATT  50
      |||||  |||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTT--TTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATT  48

seq1  TCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTG  100
      ||||||||||||||||||| ||||| || |||||||||||||||||||| 
seq2  TCCAATGCTATACCAAAAGACCCCCTTACCCACCCACCCCCACTCCCCTA  98

seq1  CCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATA  150
      |||||||||||||||  |||||||||||  ||||||||||| |||||| |
seq2  CCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCACA  148

seq1  TAAAGTTTGCAAGTCCAATGGGCCTC  176
       ||||| |||  ||||||||||||||
seq2  CAAAGTCTGCGTGTCCAATGGGCCTC  174

seq1: chr4_30425235_30426473
seq2: B6Ng01-121B17.g_65_1285 (reverse)

seq1  AGTGGTTTTAAAGTTAACAGGGTAGATGGTTATATGACATTACTGATAAG  50
      |||||| || ||||||   |||||||||| |||| ||| |  | ||||||
seq2  AGTGGTGTT-AAGTTACACGGGTAGATGG-TATA-GAC-TACCGGATAAG  46

seq1  AAGTATTAACTTGAC-AGATATCACTATATAGAGAGGATCTC-TGTTTTA  98
      | |   | ||||||| |||   | ||||| |||| |||  || |||||  
seq2  AGG---TTACTTGACGAGAATCCCCTATAAAGAG-GGAGTTCTTGTTTAT  92

seq1  ATGA-GGCAGAGAAAAACTCATTTTTACCCTTCACCATAATTCCAAACAA  147
      |||| ||||  |||||||||||||| |||  ||||| ||  | ||||| |
seq2  ATGAGGGCAAGGAAAAACTCATTTTAACC--TCACC-TATATTCAAACCA  139

seq1  CGTATAAA-TATAGAAGACTTAATAATGACAATTTCCACTTTTCGTTTTG  196
      |||||||| |||||||||||| |||||||||||||||||||||||  |||
seq2  CGTATAAATTATAGAAGACTT-ATAATGACAATTTCCACTTTTCG--TTG  186

seq1  ATATTTCTCAAAGAACTACCTTTCACAGAAACTTATTTGGAGGCTATCTG  246
      |||||| |||||||||||| |||||||||||||||||  |||||||||||
seq2  ATATTTTTCAAAGAACTACTTTTCACAGAAACTTATT--GAGGCTATCTG  234

seq1  ATGAACGTTGCATATTTGCCTGAAGTCAGGGGAAAGATAAAATGGGAACT  296
      ||||||||   ||||||||||||||||| |||||||||||||||||||||
seq2  ATGAACGTGCAATATTTGCCTGAAGTCA-GGGAAAGATAAAATGGGAACT  283

seq1  TGTTTCTACTTTACATTCCTAGATACTCATTGTATTCAAAGCATGATCTT  346
         ||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  --GTTCTACTTTACATTCCTAGATACTCATTGTA-TCAAAGCATGATC-T  329

seq1  CATTCAGTAATACTGTGTCAGTAACATTGCACTTATTTTAACAAACTATG  396
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTCAGTAATACTGTGTCAGTAACATTGCAC-TATTTTAACAAACTATG  378

seq1  TACTAACCAGACCATTCTTTACAAAGATAATATGTTAATGAAGACGTATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACCAGACCATTCTTTACAAAGATAATATGTTAATGAAGACGTATA  428

seq1  TCTGCTGTATTGCTATAGCACCCGTAGAATCTTATATGTGCTTTCTCGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTATTGCTATAGCACCCGTAGAATCTTATATGTGCTTTCTCGTT  478

seq1  TGAGTACACTAAAGGTAAATATTTATATCACTAGCAAACTTATTGCTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACACTAAAGGTAAATATTTATATCACTAGCAAACTTATTGCTTTT  528

seq1  AGAAGACGTTTAAAACTATATAAAGATTCCTAGTAACAAGAAATCTACCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACGTTTAAAACTATATAAAGATTCCTAGTAACAAGAAATCTACCA  578

seq1  TTAATAAAGCAGTTCCTGAGACAAACTTTCTCTGGGGTTAGAATGAAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGCAGTTCCTGAGACAAACTTTCTCTGGGGTTAGAATGAAACA  628

seq1  AAAATTTAATGGGTACACAGATCCAATGGATAAAATATGATCAACTTTGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAATGGGTACACAGATCCAATGGATAAAATATGATCAACTTTGG  678

seq1  AAGTGACATTTGAGCACCTTCTGTATGAGGAGTGTTTTTGAGTTCAAGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACATTTGAGCACCTTCTGTATGAGGAGTGTTTTTGAGTTCAAGGG  728

seq1  AAAAGACAATAGTCATGGTAGATGCTGTCTGGGGCTTAGATTTTGCCATC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAATAGTCATGGTAGATGCTGTCTGGGGCTTAGATTTTGCCATC  778

seq1  GTTAGTGCTTTCTTTATGTTTTATTTGGTCAGTACTTTAAAAACCAAGTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGCTTTCTTTATGTTTTATTTGGTCAGTACTTTAAAAACCAAGTA  828

seq1  CACTGGAAACAATGATTTTTGTTCTATCCTAGATGTTCAAATTATTAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAACAATGATTTTTGTTCTATCCTAGATGTTCAAATTATTAAAG  878

seq1  GAAAGGAACTTGATTACTCATAATTACATGCCATTTTCTAATGCAAGGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAACTTGATTACTCATAATTACATGCCATTTTCTAATGCAAGGTT  928

seq1  TGAGTAAGAGAAAGCTTCAGGAAATCACCACTGCACACTGAAATAAACAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGAGAAAGCTTCAGGAAATCACCACTGCACACTGAAATAAACAA  978

seq1  AAGCAGTAGATGTAGATTGTGTCGCACCTTCAATCTGTCCTGGATTAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTAGATGTAGATTGTGTCGCACCTTCAATCTGTCCTGGATTAATG  1028

seq1  CATGCATCACTTAATACATATTTCCATTGAGATCTCTGGTTGTTTCAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCACTTAATACATATTTCCATTGAGATCTCTGGTTGTTTCAGAA  1078

seq1  TTAAAACAGATAGACATAGTAACCTTTCAAGGTAGGATTTAGCTTTGGAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAGATAGACATAGTAACCTTTCAAGGTAGGATTTAGCTTTGGAC  1128

seq1  CAATTTTCTTGGTTAAAGACAGAACTCAAAGTTTACATCGGGCTTTCCTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCTTGGTTAAAGACAGAACTCAAAGTTTACATCGGGCTTTCCTG  1178

seq1  TATTGGGTCTGGGCATGCAGCAATGAAGTGAATGTGTGAATTC  1239
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGGTCTGGGCATGCAGCAATGAAGTGAATGTGTGAATTC  1221