BAC Information

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BAC

Clone NameB6Ng01-121M17
Chromosome18 (Build37)Y (Build37)
Map Location 29,098,710 - 29,099,1492,652,627 - 2,652,692
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M17.bB6Ng01-121M17.g
ACCDH925386DH925387
length434887
definitionDH925386|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M17, 5' end.DH925387|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,098,710 - 29,099,149)(2,652,627 - 2,652,692)
sequence
aataagaaacaaagctgagagactgtgcatcctacaagtggtagagaagg
tccaaccatgagacatgcctcaccaatgtggctgactaagtgagacctaa
agaggacagtaccaatacacatgctaagatggtaagaggaaatctcataa
ggccccacctttggaactacagagaactaaaagataatgagagtgggaga
aatggtcttccctagggaggaccctttaattggttattcagtgccaagtt
ttcatcacacacacgcacacgcacacaaacaccacacacacaccatacag
aggcacatacacaaacacacacatatacatataaattatgttactcctag
atttttttgtgtgttttacccatcaatcattcctgatcttagaaaatgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcattggtgcactggctatgtcttgctagaagacatcacttttgct
atatatctccctattatctggctcttactttctttccactccttcttttg
gtgatgttcttcaaacattgtaagagttgaactagatctttcatttagag
ccaagcaccccagcataatctgttgggagccgcgcccacattcgccgtta
caagatggcgctgacagctgtgttctaagtggtaaacaaataatctgcgc
atgtgccgagggtggttcttcactccatgtgctctgccttccccgtgacg
tcaactcggccgatgggctgcagccaatcagggagtgacacgtcctaggc
gaaggagaattctccttaatagggacggggtttcgttttctctctctctt
gcttcttacactcttgctcctgaagatgtaagcaataaagttttgccgca
gaagattctggtctgtggtgttcttcctggccgggcgtgagaacgcgtct
aataacaattggtgccgaattccgggacgagaaaaaactcgggactggcg
caaggaagatccctcattccagaaccagaactgcgggtcgcggtaataaa
ggttcccgtaaagcagactgttaagaaggattcaactgtatgaattcaga
acttttcagctggggaacgagagtaccagtgagtacagctttacgaggta
agtctgatcttgaactttctaaggaaattcaagacagtctatcagaagta
aagtggaaaatggctttacaagttatgtttggccttgaattttttctagt
gttagaagcccttttgttccttttcacatgttatcaagtggttaagcagg
gcggattctagatgaattcagacagctatcagagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_29098710_29099149
seq2: B6Ng01-121M17.b_49_488

seq1  GAATTCAATAAGAAACAAAGCTGAGAGACTGTGCATCCTACAAGTGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAGAAACAAAGCTGAGAGACTGTGCATCCTACAAGTGGTAG  50

seq1  AGAAGGTCCAACCATGAGACATGCCTCACCAATGTGGCTGACTAAGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTCCAACCATGAGACATGCCTCACCAATGTGGCTGACTAAGTGAG  100

seq1  ACCTAAAGAGGACAGTACCAATACACATGCTAAGATGGTAAGAGGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAGAGGACAGTACCAATACACATGCTAAGATGGTAAGAGGAAATC  150

seq1  TCATAAGGCCCCACCTTTGGAACTACAGAGAACTAAAAGATAATGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGCCCCACCTTTGGAACTACAGAGAACTAAAAGATAATGAGAGT  200

seq1  GGGAGAAATGGTCTTCCCTAGGGAGGACCCTTTAATTGGTTATTCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAATGGTCTTCCCTAGGGAGGACCCTTTAATTGGTTATTCAGTGC  250

seq1  CAAGTTTTCATCACACACACGCACACGCACACAAACACCACACACACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTTCATCACACACACGCACACGCACACAAACACCACACACACACC  300

seq1  ATACAGAGGCACATACACAAACACACACATATACATATAAATTATGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGGCACATACACAAACACACACATATACATATAAATTATGTTAC  350

seq1  TCCTAGATTTTTTTGTGTGTTTTACCCATCAATCATTCCTGATCTTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATTTTTTTGTGTGTTTTACCCATCAATCATTCCTGATCTTAGAA  400

seq1  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  440
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  440

seq1: chrY_2652627_2652692
seq2: B6Ng01-121M17.g_257_321

seq1  TCGCCATTACAAGATGGCGCTGATATCCGGTGTTCTAACTGGTAAACAAA  50
      ||||| ||||||||||||||||| |  | ||||||||| |||||||||||
seq2  TCGCCGTTACAAGATGGCGCTGACA-GCTGTGTTCTAAGTGGTAAACAAA  49

seq1  TAGTCTGCGCATGTGC  66
      || |||||||||||||
seq2  TAATCTGCGCATGTGC  65