BAC Information

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BAC

Clone NameB6Ng01-123F11
ChromosomeY (Build37)12 (Build37)
Map Location 1,870,346 - 1,870,5033,452,225 - 3,452,879
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123F11.bB6Ng01-123F11.g
ACCDH926531DH926532
length494659
definitionDH926531|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F11, 5' end.DH926532|Mus musculus domesticus DNA, BAC clone: B6Ng01-123F11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,503)(3,452,225 - 3,452,879)
sequence
ttgatgcttctgcactccacctcccaaataccatagtttcatgtgtgtac
taccacaccagccaataatgatatatagactgttttaaattatgggtttt
gcctttatggcagttcattgaaaactggcaagatggaccatctagagact
gccatatcagggaaccatcccataatcagcctccaaacgctgacaccatt
gcatacactagcaagattttgctgaaaggaccctgatatagctgtctctt
gtgagactacgctggggcctagcaaatacagaagtggatgctcacagtca
gctattggatggatcacagggcccccaatggaggagctagagaaagtacc
caaggagctaaagggatctgcaaccctataggtggaacaacaatatgaac
taaccagtaccccggagctcttgactttagctgcatatgtatcaaaagat
ggcctagtcggccatcactgcaaagagaggcccattggacttgc
gaattcatatacgatgagaagctgactgagaataaagctaaaagaaagaa
cagagaccaagactagatgacatctttttgatccagcttggatttcccaa
ggaatgtttagctgtatgagttaaattctctagccttcttactaagctca
tataaattggttttcctgcttgcgagtgaaaggatattgataagaaaagg
tcaccatttcagtgtatgaattacatattagccaacttgttatgaaagaa
gaaatgtgggggctggagagatggctcagtggttaagagctccgactgct
cttccagatgtcctgaattcaaataccagcaaccacatggtggctcacaa
ccatctgtaatgacatctgacgccttcttctggtgcatctgaagacagct
acagtgtacttacatataataataaatatttaaaggaaggaaggaaggaa
ggaaggaaggaaggaaggaaggaaggaagaaatgtgggcgttaagttttg
accacagttcctattattgtgctgatataatacagccaccactggtaaag
aaatcacaacttttgaacttagttttctccctttataaaaacaggaataa
taaccataactgtaggtttttagtggggaagatgagtaaaagcaaagcca
tctaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870503
seq2: B6Ng01-123F11.b_390_547

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||| ||||||||||||| |||||| |||||||||||| | |||||||
seq2  ACAACAATATGAACTAACCAGTACCCCGGAGCTCTTGACTTTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGCAAAGAGAGGCCCATT  150

seq1  GGACATGC  158
      |||| |||
seq2  GGACTTGC  158

seq1: chr12_3452225_3452879
seq2: B6Ng01-123F11.g_68_726 (reverse)

seq1  TGCTTTAGATGGCTTTGC-TTTACTCATCTTCCCCACT-AAAACCTACAG  48
      |||||||||||||||||| ||||||||||||||||||| |||||||||||
seq2  TGCTTTAGATGGCTTTGCTTTTACTCATCTTCCCCACTAAAAACCTACAG  50

seq1  TTATGGTTATTATTCCTGTTTTTAT-AAGGGAGAAAACTAAGTTCAAAAG  97
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTATGGTTATTATTCCTGTTTTTATAAAGGGAGAAAACTAAGTTCAAAAG  100

seq1  TTGTGATTTCTTTACCAGTGGTGGCTGTATTATATCAGCACAATAATAGG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTCTTTACCAGTGGTGGCTGTATTATATCAGCACAATAATAGG  150

seq1  AACTGTGGTC-AAACTTAACGCCCACATTTCTTCCTTCCTTCCTTCCTTC  196
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGTCAAAACTTAACGCCCACATTTCTTCCTTCCTTCCTTCCTTC  200

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTTTAAATATTTATTATTATATGTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTTTAAATATTTATTATTATATGTAA  250

seq1  GTACACTGTAGCTGTCTTCAGATGCACCAGAAGAAGGCGTCAGATGTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGTAGCTGTCTTCAGATGCACCAGAAGAAGGCGTCAGATGTCAT  300

seq1  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGTATTTGAATTCAGGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGTATTTGAATTCAGGAC  350

seq1  ATCTGGAAGAGCAGTCGGAGCTCTTAACCACTGAGCCATCTCTCCAGCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAGAGCAGTCGGAGCTCTTAACCACTGAGCCATCTCTCCAGCCC  400

seq1  CCACATTTCTTCTTTCATAACAAGTTGGCTAATATGTAATTCATACACTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTCTTCTTTCATAACAAGTTGGCTAATATGTAATTCATACACTG  450

seq1  AAATGGTGACCTTTTCTTATCAATATCCTTTCACTCGCAAGCAGGAAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGACCTTTTCTTATCAATATCCTTTCACTCGCAAGCAGGAAAAC  500

seq1  CAATTTATATGAGCTTAGTAAGAAGGCTAGAGAATTTAACTCATACAGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATATGAGCTTAGTAAGAAGGCTAGAGAATTTAACTCATACAGCT  550

seq1  AAACATTCCTTGGGAAATCCAAGCTGGATCAAAAAGATGTCATCTAGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTCCTTGGGAAATCCAAGCTGGATCAAAAAGATGTCATCTAGTCT  600

seq1  TGGTCTCTGTTCTTTCTTTTAGCTTTATTCTCAGTCAGCTTCTCATCGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGTTCTTTCTTTTAGCTTTATTCTCAGTCAGCTTCTCATCGTA  650

seq1  TATGAATTC  655
      |||||||||
seq2  TATGAATTC  659