BAC Information

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BAC

Clone NameB6Ng01-123H20
ChromosomeY (Build37)9 (Build37)
Map Location 573,321 - 573,35528,033,744 - 28,034,774
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123H20.bB6Ng01-123H20.g
ACCDH926640DH926641
length5001,022
definitionDH926640|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H20, 5' end.DH926641|Mus musculus domesticus DNA, BAC clone: B6Ng01-123H20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,355)(28,033,744 - 28,034,774)
sequence
gaattcctaggcaaatgaatggacctggagggcattgtcctgagtgaggt
aacccaatcacaaaagaaatcacatcatatgtactcactgataagtggat
actagcccagaaacttaggatacccaagatataagatacaatttgctaaa
tgcatgaaactcaagaagaccaaagaccaaagtgtggacactttgcccct
tcttagaattgggaacaaaacacccatggaaggagttacagagacaaagt
ttggagctgagacgaaaggatggaccatctagagactgccatatccaggg
atccatcccataatcagcttccaaatgctgacaccattgcctacactagc
aagattttgctgaaaggacccagatagagctgtctctcgtgagactatgc
cagggcctaggaaacacagaagtggatgctcacagtcagctattggttgg
atcacagggcccccaatggaggagctagagaaagtacccaaggggctaaa

gaattctctttaagtaactaaatatttggatgcttgggtgatcagactcc
aaactctatgaggttcgcagctcttctccctaatctccatctcatggagg
gaaggagggtcaagtggtggtagttcttctgcattctgggtaacgcctgc
actcagtcaatctgccacagaggagcttcgtgaacagattgttaatttcc
ccctttctccctgaatagcactgtgccttctggcaggaagcggcatgttc
catccatccacactctctcacctgtggacaggagaagctctctaatcagc
gcccgctttttgccccactgggctgtgactgagcagggagaccaagctct
gtgcaacttgctaattgtctcagcctgtaactcttaaatgatgaaaaaga
ttaaaagggaaggaaaacagctattatatctctttcttgaaaaaactttc
cccgtgaaaggctcattaacatcattagtgttccattaacctctagccag
acaaataagctggaggtaatttcagagcatggggagaaagagagagtgag
gaatttttaaattatccgggggtaggtgacatttcccagctacctcaaat
gaacacttggacagacaccagcgactttaacttacgtcatgacagcccgg
cactgggggatagccaagactgtggctggtaggcaggtctgtaggtgata
gcaagcaggagattcattgattggaacacaatgaaattcattttaacatg
gcaacatgtaaagtcttatgaagaacactgtgtgaacaatacaaagtgaa
aaatatctactccatatatgctctactgttgaagaaaacatctttacctt
gctgtttccacttagattttctggttattcaatccgtaccttcattgtct
gtccctcctttgatccaactctcacaaaattctgccacaaccagaaaagt
gatgcaaaccattgtgagtctcttagtcttcagagctttctatatagaga
gaaccatttttttagatggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573355
seq2: B6Ng01-123H20.b_511_545

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAA  35
      |||||||||||||||||||||||||||| ||||||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGGGCTAAA  35

seq1: chr9_28033744_28034774
seq2: B6Ng01-123H20.g_67_1088

seq1  GAATTCTCTTTAAGTAACTAAATATTTGGATGCTTGGGTGATCAGACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAGTAACTAAATATTTGGATGCTTGGGTGATCAGACTCC  50

seq1  AAACTCTATGAGGTTCGCAGCTCTTCTCCCTAATCTCCATCTCATGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTATGAGGTTCGCAGCTCTTCTCCCTAATCTCCATCTCATGGAGG  100

seq1  GAAGGAGGGTCAAGTGGTGGTAGTTCTTCTGCATTCTGGGTAACGCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGTCAAGTGGTGGTAGTTCTTCTGCATTCTGGGTAACGCCTGC  150

seq1  ACTCAGTCAATCTGCCACAGAGGAGCTTCGTGAACAGATTGTTAATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCAATCTGCCACAGAGGAGCTTCGTGAACAGATTGTTAATTTCC  200

seq1  CCCTTTCTCCCTGAATAGCACTGTGCCTTCTGGCAGGAAGCGGCATGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCCCTGAATAGCACTGTGCCTTCTGGCAGGAAGCGGCATGTTC  250

seq1  CATCCATCCACACTCTCTCACCTGTGGACAGGAGAAGCTCTCTAATCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCACACTCTCTCACCTGTGGACAGGAGAAGCTCTCTAATCAGC  300

seq1  GCCCGCTTTTTGCCCCACTGGGCTGTGACTGAGCAGGGAGACCAAGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCTTTTTGCCCCACTGGGCTGTGACTGAGCAGGGAGACCAAGCTCT  350

seq1  GTGCAACTTGCTAATTGTCTCAGCCTGTAACTCTTAAATGATGAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAACTTGCTAATTGTCTCAGCCTGTAACTCTTAAATGATGAAAAAGA  400

seq1  TTAAAAGGGAAGGAAAACAGCTATTATATCTCTTTCTTGAAAAAACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGGAAGGAAAACAGCTATTATATCTCTTTCTTGAAAAAACTTTC  450

seq1  CCCGTGAAAGGCTCATTAACATCATTAGTGTTCCATTAACCTCTAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGAAAGGCTCATTAACATCATTAGTGTTCCATTAACCTCTAGCCAG  500

seq1  ACAAATAAGCTGGAGGTAATTTCAGAGCATGGGGAGAAAGAGAGAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAAGCTGGAGGTAATTTCAGAGCATGGGGAGAAAGAGAGAGTGAG  550

seq1  GAATTTTTAAATTATCCGGGGGTAGGTGACATTTCCCAGCTACCTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAAATTATCCGGGGGTAGGTGACATTTCCCAGCTACCTCAAAT  600

seq1  GAACACTTGGACAGACACCAGCGACTTTAACTTACGTCATGACAGCCCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGGACAGACACCAGCGACTTTAACTTACGTCATGACAGCCCGG  650

seq1  CACTGGGGGATAGCCAAGACTGTGGCTGGTAGGCAGGTCTGTAGGTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGGATAGCCAAGACTGTGGCTGGTAGGCAGGTCTGTAGGTGATA  700

seq1  GCAAGCAGGGAGATTCATTGATTGGAACACAATGAAATTCATTTTAACAT  750
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCA-GGAGATTCATTGATTGGAACACAATGAAATTCATTTTAACAT  749

seq1  GGCAACATGTAAAGTCTTATGAAGGAACACTGTGTGGAACAATACAAAGT  800
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GGCAACATGTAAAGTCTTATGAA-GAACACTGTGT-GAACAATACAAAGT  797

seq1  GAAAAATATCTACTCCAATATAATGCTCTACTGTTGAAGAAAACATCTTT  850
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  GAAAAATATCTACTCC-ATAT-ATGCTCTACTGTTGAAGAAAACATCTTT  845

seq1  ACCTTGCTGTTTTCCACTTAGATTTTCT-GTTATTCAAATCCGTACCTCC  899
      ||||||||| |||||||||||||||||| ||||||| ||||||||||| |
seq2  ACCTTGCTG-TTTCCACTTAGATTTTCTGGTTATTC-AATCCGTACCTTC  893

seq1  A-TGTCTGTCCCTCCTTTGATCCAACTCTCACAAAA-TCTGCCACAAACC  947
      | |||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  ATTGTCTGTCCCTCCTTTGATCCAACTCTCACAAAATTCTGCCAC-AACC  942

seq1  AGAAAAGTGAATGCAAACCATTGTTGAGTCTCTTAGTCTTCCAGAGGCTT  997
      ||||||||| ||||||||||||| |||||||||||||||| |||| ||||
seq2  AGAAAAGTG-ATGCAAACCATTG-TGAGTCTCTTAGTCTT-CAGA-GCTT  988

seq1  TCTAATATAGAGAGAA-CAATTTTTAAGATGGAGG  1031
      ||| |||||||||||| || ||||| |||||||||
seq2  TCT-ATATAGAGAGAACCATTTTTTTAGATGGAGG  1022