BAC Information

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BAC

Clone NameB6Ng01-123N18
ChromosomeY (Build37)6 (Build37)
Map Location 1,120,577 - 1,120,982110,312,565 - 110,313,402
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N18.bB6Ng01-123N18.g
ACCDH926914DH926915
length7901,070
definitionDH926914|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N18, 5' end.DH926915|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,577 - 1,120,982)(110,312,565 - 110,313,402)
sequence
gaattccattgtgtaaatgtaccacatttactgtatccattcctcagttg
atggacacctgggttccttctagtttccggcaattctgaacaaggctttt
ttttttttttttccattttttattaggtatttaactcatttacatttcca
atgctataccaaaagtcccccatatccacccacccccactcccctgccca
cccactccccctttttggccctggtattcccctgtactagggcatataaa
gtttgcaagtccaatgggcctctctttccagtgatggccgactaggccat
cttttgatatatatgcagctagagtcaaaagctccggggtactggttagc
tcataatgttgttccacttatagggttgcaaatccctttagctccttggc
tactttctctagctcctccattgggagccctatgatccatccattagctg
actgtgagcatccacttctgtgtttgctgggccccggcatagtctcacaa
aaaacagctacatctgcgtcctttcaataaaatcttgctagtgtatgcaa
tggtgtcagcgtttggatgctgattatggggtggatccctggctatggca
gtctctacatggtccatcctttcatctcagctccaaactccgtctctgta
actccttccatgggtgttttgttcccaaatctaaggaggggcatagtgtc
cacacttcagtcttcattctccttgattttcatgtgtttagcaaattata
tcttatatcttggggtatcctaggtttggggcttatatcc
gaattcagtaagaatgttacctattcagtaacattcaaatttacttctag
tagagaaggtgaaactaattaggcattacaatttacttgaatagtgctag
aaaagctcagggctagtctacatagtaattacttagaacaatagctgagt
cacacctatacacaggaatacacaatggcctaggaaataggtgggttgta
gtattgttcatgaaagggttaatagaaaggaatacccctggtgcaggttt
ttcactaggcccaaaggaatagcataatcaggtatttactaaaggacgcc
tggtggtgagtttaacaatagactagcattgcatcagagcattcacctgg
ctccagtgtttagctgatcttaattaagggttgttcctattctcagttgt
aaacacagcctggctccagctgccatctttctttctatgtatgccttttc
tttgttttgtgttgatgtacctaggcagatgtattcatctagctttcttg
tttttctttagtattaaaagtctggtgtttgagaaaatatatccagatag
cactcccttgtgtctgtgtctgtttgtcaccccttctcgctgactcctgc
ctatctatccagaactctaatttcccaaggattgaaagaggccaactgag
gctggtccctggcatatatgtatatataatctatctatctatctatctat
ctatctatctatctatctatctatctatctattttttgactctttttttt
taaatacatgcaacatcctctccacgcatctcaggtttttcttgagtaga
tgaggtcaggtcttcataaaacgagtgcttcccaacaagagatatagaag
ttgtcagagcaggaaggagttcatggaggcatagaaccatgaaagccata
tcaggctctgtcagcaagcactttctggcatctgcaaaagtcactacaaa
aatttgaggtgcatgttaaaattcagaaaagtagacaaggattgtgaaag
actgaagaatacttaagaaaataggagccctatataggcgacgcatggag
gtaccttcctggacaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120577_1120982
seq2: B6Ng01-123N18.b_143_546

seq1  TTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACA  50
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTT--TTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACA  48

seq1  TTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCC  98

seq1  TGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCA  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTAGGGCA  148

seq1  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  198

seq1  GGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCCATCTTTTGATATATATGCAGCTAGAGTCAAAAGCTCCGGGGTACTG  248

seq1  GTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTC  300
      |||||||||||| |||||||||| |||||||||| | |||||||||||||
seq2  GTTAGCTCATAATGTTGTTCCACTTATAGGGTTGCAAATCCCTTTAGCTC  298

seq1  CTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCAT  348

seq1  TAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTC  398

seq1  TCACAA  406
      ||||||
seq2  TCACAA  404

seq1: chr6_110312565_110313402
seq2: B6Ng01-123N18.g_303_1139

seq1  ACCCCTGGTGCAGGTTTTTCACTAGGCCCAAAGGAATAGCATAATCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGTGCAGGTTTTTCACTAGGCCCAAAGGAATAGCATAATCAGGT  50

seq1  ATTTACTAAAGGACGCCTGGTGGTGAGTTTAACAATAGACTAGCATTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAAAGGACGCCTGGTGGTGAGTTTAACAATAGACTAGCATTGCA  100

seq1  TCAGAGCATTCACCTGGCTCCAGTGTTTAGCTGATCTTAATTAAGGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCATTCACCTGGCTCCAGTGTTTAGCTGATCTTAATTAAGGGTTG  150

seq1  TTCCTATTCTCAGTTGTAAACACAGCCTGGCTCCAGCTGCCATCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTCTCAGTTGTAAACACAGCCTGGCTCCAGCTGCCATCTTTCTT  200

seq1  TCTATGTATGCCTTTTCTTTGTTTTGTGTTGATGTACCTAGGCAGATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATGCCTTTTCTTTGTTTTGTGTTGATGTACCTAGGCAGATGTA  250

seq1  TTCATCTAGCTTTCTTGTTTTTCTTTAGTATTAAAAGTCTGGTGTTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTAGCTTTCTTGTTTTTCTTTAGTATTAAAAGTCTGGTGTTTGAG  300

seq1  AAAATATATCCAGATAGCACTCCCTTGTGTCTGTGTCTGTTTGTCACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATCCAGATAGCACTCCCTTGTGTCTGTGTCTGTTTGTCACCCC  350

seq1  TTCTCGCTGACTCCTGCCTATCTATCCAGAACTCTAATTTCCCAAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCTGACTCCTGCCTATCTATCCAGAACTCTAATTTCCCAAGGATT  400

seq1  GAAAGAGGCCAACTGAGGCTGGTCCCTGGCATATATGTATATATA----A  446
      |||||||||||||||||||||||||||||||||||||||||||||    |
seq2  GAAAGAGGCCAACTGAGGCTGGTCCCTGGCATATATGTATATATAATCTA  450

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATT  500

seq1  TTTTGACTCTTTTTTTTTAAATACATGCAACATCCTCTCCACGCATCTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTCTTTTTTTTTAAATACATGCAACATCCTCTCCACGCATCTCA  550

seq1  AGTTTTTCTTGAGTAGATGAGGTCAGGTCTTCATAAAACGAGTGCTTCCC  596
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCTTGAGTAGATGAGGTCAGGTCTTCATAAAACGAGTGCTTCCC  600

seq1  AACAAGAGATATAGAAGTTGTCAGAGCAGGAAGGAGTTCATGGAGGCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACAAGAGATATAGAAGTTGTCAGAGCAGGAAGGAGTTCATGGAGGCAT-  649

seq1  AGAACCAATGACAGCCATATCAGGCTCTGTCAGCAAGCACTTTCTGGCAT  696
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  AGAACC-ATGAAAGCCATATCAGGCTCTGTCAGCAAGCACTTTCTGGCAT  698

seq1  CTGCAAAAAGTCACTACAAAAAATTTTGA-GTGCAATGTTAAAATTCAGA  745
      |||| |||||||||||||||||  ||||| |||| |||||||||||||| 
seq2  CTGC-AAAAGTCACTACAAAAA--TTTGAGGTGC-ATGTTAAAATTCAG-  743

seq1  AAAAGTAGACAAGGTATTGTGAAAGACTGAAGAATACTTAAGAAAATA-G  794
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  AAAAGTAGACAAGG-ATTGTGAAAGACTGAAGAATACTTAAGAAAATAGG  792

seq1  AGCCATATAATAGG-GCAGCATGGAGGTA-CTTCTCTGACAATAAA  838
      |||| ||| ||||| |  ||||||||||| ||||   |||||||||
seq2  AGCCCTAT-ATAGGCGACGCATGGAGGTACCTTCCTGGACAATAAA  837