BAC Information

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BAC

Clone NameB6Ng01-124E19
ChromosomeY (Build37)5 (Build37)
Map Location 1,870,346 - 1,870,53956,180,568 - 56,181,622
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E19.bB6Ng01-124E19.g
ACCDH927242DH927243
length4941,039
definitionDH927242|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E19, 5' end.DH927243|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,539)(56,180,568 - 56,181,622)
sequence
tttgtttagctctgagccccattttttaatggggttattagattttctgg
agtctaccttcttgagttctttatatatattggatattagttccctatct
gatttaggataggtaaagatcctttcccactctcttggtggcctttttgc
cttattgaaggtgtcttttgccttgcagaagctttgcaattttatgaggt
cccatttgtagattcttgatcttacagcacaagccattgctgttctattc
aggaattttccccctatacccatatcttcatggcccccaatggaggagct
agagaaaatacccaaggagctaaaggggtctgcaaccctataggtggaag
aacaatatgaactaaccagtaacccccagagctcatgtctctagctgtat
atatatcagaagatggcctagtcggccatcagtgtaaagagaggtccatt
ggtcatgcaaactttatctgccttagtacaggggaatgccaggg
gaattcatagtggttaaataatttatgcaaggtcaaagaccagcaagtag
aatgccaggactggagagattttgcttgccgaggaaacatgtctttttac
caccggggcttgtactgttctccgcctagcactcagcaaagtgccgatta
tctgcttcacttgctgctaatcttgggaatatttttggtttgaatgctta
tccctgaagcgctttctgacctatgtgtcctcttgcttgcttatttgttt
gtttatttatttatttatttatttatttattgcttatttatttatttatt
tctctcttctcttttgcctggaatgctctctcacattgcactgaagaaag
gcatgctatatttgcctcctacttggaaaaagagatactggtagattttt
cttcaaaggggaaagtaaataattacgcaaaaataaaataaaaataaaat
gtaaaataaaaggggattgtaatctgtcaatctgtatgccatgccattac
agtagcttgattatcataataccagcttattactgtcaaacaacttacag
ataattacttatcaatgctgtgttcttgcgttcctgaggcagtttgatat
agtgaaaacagacataggaagaacacagagaacgttgaagaattacagct
cttaaagagtcaaaaatgaaacaagtaagattcgctgaaatgcacaacca
cgaggagggagaacctgtagagagcatatccagaggttaagcaagccctc
cagtttcgggatgtggccacccactcatctccaaatgtttaacccagaac
tgcttctgtctaaggaaatacagggacaaagtgtagagccgagactgaaa
gaaaggccatccagagactgttccactgggatccatcccatatacagacg
ccaaactcagacactattgcagatgcaagaagtgcttgctgacagagctg
atgtagttgtctctcagagctctgcagagcttgacattacaggtgatgct
ctcagccaacattgactgagccatgggttcccatggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870539
seq2: B6Ng01-124E19.b_347_542

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGAGAAAATACCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGA  50

seq1  ACAACATTATGAACTAACCATTA--CCCCTGAGCTCTTGACTCTTGCTGC  98
      | |||| ||||||||||||| ||  |||| |||||| || |||| |||| 
seq2  AGAACAATATGAACTAACCAGTAACCCCCAGAGCTCATGTCTCTAGCTGT  100

seq1  ATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCA  148
      |||  ||||| |||||||||||||||||||||| || ||||||||| |||
seq2  ATATATATCAGAAGATGGCCTAGTCGGCCATCAGTGTAAAGAGAGGTCCA  150

seq1  TTGGACATGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGG  194
      |||| |||||||||||||| ||||  |||||||||||| |||||||
seq2  TTGGTCATGCAAACTTTATCTGCCTTAGTACAGGGGAATGCCAGGG  196

seq1: chr5_56180568_56181622
seq2: B6Ng01-124E19.g_67_1105

seq1  GAATTCATAGTGGTTAAATAATTTATGCAAGGTCAAAGACCAGCAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTGGTTAAATAATTTATGCAAGGTCAAAGACCAGCAAGTAG  50

seq1  AATGCCAGGACTGGAGAGATTTTGCTTGCCGAGGAAACATGTCTTTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAGGACTGGAGAGATTTTGCTTGCCGAGGAAACATGTCTTTTTAC  100

seq1  CACCGGGGCTTGTACTGTTCTCCGCCTAGCACTCAGCAAAGTGCCGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGGGCTTGTACTGTTCTCCGCCTAGCACTCAGCAAAGTGCCGATTA  150

seq1  TCTGCTTCACTTGCTGCTAATCTTGGGAATATTTTTGGTTTGAATGCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCACTTGCTGCTAATCTTGGGAATATTTTTGGTTTGAATGCTTA  200

seq1  TCCCTGAAGCGCTTTCTGACCTATGTGTCCTCTTGCTTGCTTATTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGAAGCGCTTTCTGACCTATGTGTCCTCTTGCTTGCTTATTTGTTT  250

seq1  GTTTATTTATTTATTTATTTATTTATTTATTGCTTATTTATTTATTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTATTTATTTATTTATTTATTTATTGCTTATTTATTTATTTATT  300

seq1  TCTCTCTTCTCTTTTGCCTGGAATGCTCTCTCACATTGCACTGAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTCTCTTTTGCCTGGAATGCTCTCTCACATTGCACTGAAGAAAG  350

seq1  GCATGCTATATTTGCCTCCTACTTGGAAAAAGAGATACTGGTAGATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTATATTTGCCTCCTACTTGGAAAAAGAGATACTGGTAGATTTTT  400

seq1  CTTCAAAGGGGAAAGTAAATAATTACGCAAAAATAAAATAAAAATAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGGGAAAGTAAATAATTACGCAAAAATAAAATAAAAATAAAAT  450

seq1  GTAAAATAAAAGGGGATTGTAATCTGTCAATCTGTATGCCATGCCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAAAGGGGATTGTAATCTGTCAATCTGTATGCCATGCCATTAC  500

seq1  AGTAGCTTGATTATCATAATACCAGCTTATTACTGTCAAACAACTTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTGATTATCATAATACCAGCTTATTACTGTCAAACAACTTACAG  550

seq1  ATAATTACTTATCAATGCTGTGTTCTTGCGTTCCTGAGGCAGTTTGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTACTTATCAATGCTGTGTTCTTGCGTTCCTGAGGCAGTTTGATAT  600

seq1  AGTGAAAACAGACATAGGAAGAACACAGAGAACGTTGAAGAATTACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAACAGACATAGGAAGAACACAGAGAACGTTGAAGAATTACAGCT  650

seq1  CTTAAAGAGTCAAAAAATGAAACAAGTAAGATTCGCTGAAATGCACAACC  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAGTC-AAAAATGAAACAAGTAAGATTCGCTGAAATGCACAACC  699

seq1  ACGAGGAGGGAGAACCTGTAGAGAGCATATCCAGAGGTTAAGCAAGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGAGGGAGAACCTGTAGAGAGCATATCCAGAGGTTAAGCAAGCCCT  749

seq1  CCAGTTTCGGGATGTGGCCACCCACTCATCTCCAAATGTTTAACCCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCGGGATGTGGCCACCCACTCATCTCCAAATGTTTAACCCAGAA  799

seq1  CTGCTTCTGTCTAAGGAAATACAGGGACAAAGTGTAGAGCCGAGACTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGTCTAAGGAAATACAGGGACAAAGTGTAGAGCCGAGACTGAA  849

seq1  AGAAAGGCCATCCAGAGACTGTTCCACCTGGGGATCCATCCCATATACAG  900
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  AGAAAGGCCATCCAGAGACTGTTCCAC--TGGGATCCATCCCATATACAG  897

seq1  ACGCCAAACTCAGACACTATTGCAGATGGCAAGAAAGTGCTTGCTGACAG  950
      ||||||||||||||||||||||||||| ||||| ||||||||||||||| 
seq2  ACGCCAAACTCAGACACTATTGCAGAT-GCAAG-AAGTGCTTGCTGACA-  944

seq1  GAGCCTGATGTAGTTGTCTCCTCAGAGGCTCTGCCAGAGCTTGACAAATA  1000
      ||| ||||||||||||||| |||||| |||||| ||||||||||| | ||
seq2  GAG-CTGATGTAGTTGTCT-CTCAGA-GCTCTG-CAGAGCTTGAC-ATTA  989

seq1  CAGGGTGGATGCTCTCAGCCAACCATTGGACTGAGCATGGGGTTCCCAAT  1050
      ||||   ||||||||||||||| |||| ||||||||   |||||||| ||
seq2  CAGG--TGATGCTCTCAGCCAA-CATT-GACTGAGCCATGGGTTCCC-AT  1034

seq1  GGAGG  1055
      |||||
seq2  GGAGG  1039