BAC Information

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BAC

Clone NameB6Ng01-126A24
ChromosomeY (Build37)13 (Build37)
Map Location 573,321 - 573,53761,015,754 - 61,016,806
singlet/doubletsingletsinglet
Overlap geneUty
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps
Downstream geneDdx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126A24.bB6Ng01-126A24.g
ACCDH928529DH928530
length3261,036
definitionDH928529|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A24, 5' end.DH928530|Mus musculus domesticus DNA, BAC clone: B6Ng01-126A24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(573,321 - 573,537)(61,015,754 - 61,016,806)
sequence
actgaaagaaccctgatatagctgtctcttgtgaggctaagccggggcct
agcaaacacagaagaggatgctcagagtcagctattggatggatcacaga
gcccccaatggaggagctagagaaagtacccaaggagctaaaggggtctg
caaccctataggtggaacaacaatatgaactaaccagtaccccccagagc
ttgtgtctctagctgcatatgtatcagaagatgacctagtcggccatcaa
ttgaaagagaggaccattggtcttgcaaacttaatatccctcagtatagg
ggaacaccagggccatgaagtgggag
gaattccaatgtctctatctgggttgccattctgaacaacggtaaccctt
gcatgctagaaatttctgaagaataaatgctctttgtctttgcatactat
ctgagtctggggtcttcctaaaatgatgttcaggccattacaatggtgtc
tgcagtctgtggtaggaccaataagtgatccccagcaaagagctttttaa
atttagaggaaattcctatgatcatctttagaaaactcctctactctgaa
gaatctttggcctactatggggccttcagggaaaatgaatatttgacaat
gaacctcctaattatcatgtgatctgaactgtgttcataatctgtctttt
atgagacttttgttcagtttatatattttcacttatttttagatagatgc
tctttatcaactatttatataaattagttatttgtagagtatataaataa
atataaaacaattaaataataaatattatttctaattagtttattgacaa
taattcatgagtcatagcagaaatgtgctgttcacaaagcagttaaaaag
tgtcttacgtcgggcagtggtggctcacgcctttaatcccagcacttggg
aggcagaggtaggcatatttctgagtctgaggccagcctggtctacagag
tcagttccaggaaaaccatggctacacagagaaacgctgttttgaaaaac
caaagaaaacaaacaaaacaaacaaacaaaacaaacaaataaaagtgttc
ttaacatctcacaagacttgcaattcccttaatctgtgtttcaggttgat
aagaaacactagaaagtttgtttgtttgtttgttttttaatgggtctcag
ttcactgatacaaatcctgagccaactatgtcttaaggcccttaggtgaa
gagctatattatttgagcatagtacagaagacccatgtgatactgaaact
aatcttgctcagctccatcctagtcctcagagagcagctagtcatatgta
gtcgtgtagttcagttgtattcggtacaaacgctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_573321_573537
seq2: B6Ng01-126A24.b_156_374

seq1  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAAACCT  50
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  ATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCT  50

seq1  ATAGATGGAACAACAATATGAA-TAACCAGTA-TCCACAGAGCTCATGTC  98
      |||| ||||||||||||||||| |||||||||  || |||||||  ||||
seq2  ATAGGTGGAACAACAATATGAACTAACCAGTACCCCCCAGAGCTTGTGTC  100

seq1  TCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCATTGGGAAG  148
      |||||||||||||||||||||||||| |||||| |||||||| | | |||
seq2  TCTAGCTGCATATGTATCAGAAGATGACCTAGTCGGCCATCAATTGAAAG  150

seq1  AGAGGCCCCTTGGTCTTGCAAACTTTATATGCCCCAGTACAGGGGAACAC  198
      ||||| || |||||||||||||||| |||| || ||||| ||||||||||
seq2  AGAGGACCATTGGTCTTGCAAACTTAATATCCCTCAGTATAGGGGAACAC  200

seq1  CAGGGCCAAGAAGTGGGAG  217
      |||||||| ||||||||||
seq2  CAGGGCCATGAAGTGGGAG  219

seq1: chr13_61015754_61016806
seq2: B6Ng01-126A24.g_64_1099

seq1  GAATTCCAATGTCTCTATCTGGGTTGCCATTCTGAACAACGGTAACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTCTCTATCTGGGTTGCCATTCTGAACAACGGTAACCCTT  50

seq1  GCATGCTAGAAATTTCTGAAGAATAAATGCTCTTTGTCTTTGCATACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGAAATTTCTGAAGAATAAATGCTCTTTGTCTTTGCATACTAT  100

seq1  CTGAGTCTGGGGTCTTCCTAAAATGATGTTCAGGCCATTACAATGGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGGGGTCTTCCTAAAATGATGTTCAGGCCATTACAATGGTGTC  150

seq1  TGCAGTCTGTGGTAGGACCAATAAGTGATCCCCAGCAAAGAGCTTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTGTGGTAGGACCAATAAGTGATCCCCAGCAAAGAGCTTTTTAA  200

seq1  ATTTAGAGGAAATTCCTATGATCATCTTTAGAAAACTCCTCTACTCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGGAAATTCCTATGATCATCTTTAGAAAACTCCTCTACTCTGAA  250

seq1  GAATCTTTGGCCTACTATGGGGCCTTCAGGGAAAATGAATATTTGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTTTGGCCTACTATGGGGCCTTCAGGGAAAATGAATATTTGACAAT  300

seq1  GAACCTCCTAATTATCATGTGATCTGAACTGTGTTCATAATCTGTCTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCTAATTATCATGTGATCTGAACTGTGTTCATAATCTGTCTTTT  350

seq1  ATGAGACTTTTGTTCAGTTTATATATTTTCACTTATTTTTAGATAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACTTTTGTTCAGTTTATATATTTTCACTTATTTTTAGATAGATGC  400

seq1  TCTTTATCAACTATTTATATAAATTAGTTATTTGTAGAGTATATAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCAACTATTTATATAAATTAGTTATTTGTAGAGTATATAAATAA  450

seq1  ATATAAAACAATTAAATAATAAATATTATTTCTAATTAGTTTATTGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACAATTAAATAATAAATATTATTTCTAATTAGTTTATTGACAA  500

seq1  TAATTCATGAGTCATAGCAGAAATGTGCTGTTCACAAAGCAGTTAAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATGAGTCATAGCAGAAATGTGCTGTTCACAAAGCAGTTAAAAAG  550

seq1  TGTCTTACGTCGGGCAGTGGTGGCTCACGCCTTTAATCCCAGCACTTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTACGTCGGGCAGTGGTGGCTCACGCCTTTAATCCCAGCACTTGGG  600

seq1  AGGCAGAGGTAGGCATATTTCTGAGTCTGAGGCCAGCCTGGTCTACAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGTAGGCATATTTCTGAGTCTGAGGCCAGCCTGGTCTACAGAG  650

seq1  TCAGTTCCAGGAAAACCATGGCTACACAGAGAAACGCTGTTTTGAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCAGGAAAACCATGGCTACACAGAGAAACGCTGTTTTGAAAAAC  700

seq1  CAAAGAAAACAAACAAAACAAAACAAAACAAAACAAAACAAAATAAAAAG  750
      ||||||||||||||||||||||   ||||||||| |||||||   |||||
seq2  CAAAGAAAACAAACAAAACAAA--CAAACAAAAC-AAACAAA--TAAAAG  745

seq1  TG-TCTT-ACATCTCACAAGACTTGCAATTCCCTTAATCTGTGTTTCAGG  798
      || |||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAACATCTCACAAGACTTGCAATTCCCTTAATCTGTGTTTCAGG  795

seq1  TTTGATAAGAAACACTAGAAAGTTTGTTTGTTTGTTTGTTTTTTTAATGT  848
       ||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  -TTGATAAGAAACACTAGAAAGTTTGTTTGTTTGTTTG-TTTTTTAATG-  842

seq1  GGTCTCAGTTCCACTGATACAAATCCTGAGCCAACTATGTCTTAA-GCCC  897
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GGTCTCAGTT-CACTGATACAAATCCTGAGCCAACTATGTCTTAAGGCCC  891

seq1  TTA-GTG-AGAGCTATATTATTTGAAGCCATAGGTACAGAAGACCCATGT  945
      ||| ||| |||||||||||||||||   |||| |||||||||||||||||
seq2  TTAGGTGAAGAGCTATATTATTTGA--GCATA-GTACAGAAGACCCATGT  938

seq1  GATACCTGAAACTTATCCTGCTCAGTCTCCATCCCTAGTCCTCAGAGCAG  995
      |||| |||||||| ||| ||||||| |||||| |||||||||||||| ||
seq2  GATA-CTGAAACTAATCTTGCTCAG-CTCCAT-CCTAGTCCTCAGAG-AG  984

seq1  CAGCTAGTCACATGTAGTCTGTTGTAG-TCAGGGTTTGTATTCTGGTACA  1044
      |||||||||| ||||||||   ||||| ||||   |||||||| ||||| 
seq2  CAGCTAGTCATATGTAGTC--GTGTAGTTCAG---TTGTATTC-GGTAC-  1027

seq1  AAACGCTAT  1053
      |||||||||
seq2  AAACGCTAT  1036