BAC Information

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BAC

Clone NameB6Ng01-128I16
ChromosomeY (Build37)17 (Build37)
Map Location 1,870,346 - 1,870,52454,836,943 - 54,838,020
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039278, EG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210
Downstream geneUbe1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874, LOC667194, LOC100042881, LOC667201, LOC100039546, Rhoay-ps2, LOC100039568, LOC100041505, LOC100039581, LOC676356, LOC667217, LOC100039613, LOC100041537, LOC667227, LOC667236, EG631479, LOC667244, LOC100039652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128I16.bB6Ng01-128I16.g
ACCDH930365DH930366
length7431,076
definitionDH930365|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I16, 5' end.DH930366|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,870,346 - 1,870,524)(54,836,943 - 54,838,020)
sequence
gaattcttttaactgaacgaagaccaaagtgtggacactttgccccctct
tagaattgggaacaaaacacccgtggaaggagttacagagacaaagtttg
gagctgagacaaaaggatggaccatctagagactgccatatccagggatg
catcccataatcagcctccaaatgctgacaccattgcatacactagcaag
attgtgctgataggactctgatatagttgtctctagtgagactatgccac
ggcctagcaaacacagaagtggatgcgcacagtcagctattggatggatc
acagggcctcctatggaggagctagagaaagtacccaaggagctaaaggg
atctgcaaccctataagtggaacaacattatgaactaaccagtaccccgg
agctcttgactctagctgcatatgtatcaaaagatggcctagtcggccat
cacttgaaagagaggcccattggacttgcaaactttatatgccccagtac
aggggaacgccagggccaaaaagtgggagtgggtgggcagggcagtgggg
ggggggaaacactcctccattgctggtgggattgcaagctggtacaatca
ctctggaaatcagtgtggcagaaccttagaaaatttggaagatccagcat
ttctactcctgggcacatacccagaagatgctccaacttgtaataaggac
acatgcttcactatgttcatagcatccttatttataataccca
gaattccatgactgatttttgataagacacattattagccttcctggtga
attttagagtttacttttcactttactctagtcacatgtatgttcatacc
tagctccttcccaagccattccctcttcctgtctcttagttccttttctt
cttcctcaattttattttttcttccaactttgccagttttctgtccccag
acaggaatataaatggttgtattatcccttcttcagtttccccttttagt
tattttataaatatatttcactgaaacaccaaactcttggcctatttttt
gttcattagtaaatccaggttttctagtttttgttaagttttggataggg
taggtctattgagaggacggtgagatggactaacagggaatacagaattt
attagaagagttattaatgctgtggacagagagcagagggtcaacaatat
ggtgagggctcatgggagagtgtaggtcccagaagcactgaaagacgtca
tggccagttccttgataagaataagaatacacattagtgtacgtctactt
ataccttagatggggagatttttagtaaaggaccccagactggttttctg
gttatcacataggcagcatggaagagcatggaaaacaggaacagttggta
ctgagaattagcatcagcatctttggtgttaattcaattattaggttagg
aagcctgtctagagtgtccctgtagatactgttcattctctgtgagaagc
cccagctatttccaagtaggccagattcaaacacgttcctccagcctcct
atttgccaatctgaacacttagttctcacaatatcagctatgatattcct
gtaaaggagctggtctacatatgccgaggactacttcagctgatcagatg
ctgggaatcctgcagctactagagcacagtgaactcccaaatcacattgg
aaccctaaagtacgtatatctgatgaaaattgtcagtcatcaagggagga
aaggcctttggtctataaaagattctattgcccaattatagcgactgcca
gggccaggagcagaattgggtgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1870346_1870524
seq2: B6Ng01-128I16.b_367_545

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAAGTGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      |||||||||||||||||||| |||||| |||||||||||||| |||||||
seq2  ACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATT  150
      | ||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTTGAAAGAGAGGCCCATT  150

seq1  GGACATGCAAACTTTATATGCCCCAGTAC  179
      |||| ||||||||||||||||||||||||
seq2  GGACTTGCAAACTTTATATGCCCCAGTAC  179

seq1: chr17_54836943_54838020
seq2: B6Ng01-128I16.g_66_1141

seq1  GAATTCCATGACTGATTTTTGATAAGACACATTATTAGCCTTCCTGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACTGATTTTTGATAAGACACATTATTAGCCTTCCTGGTGA  50

seq1  ATTTTAGAGTTTACTTTTCACTTTACTCTAGTCACATGTATGTTCATACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGAGTTTACTTTTCACTTTACTCTAGTCACATGTATGTTCATACC  100

seq1  TAGCTCCTTCCCAAGCCATTCCCTCTTCCTGTCTCTTAGTTCCTTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTCCCAAGCCATTCCCTCTTCCTGTCTCTTAGTTCCTTTTCTT  150

seq1  CTTCCTCAATTTTATTTTTTCTTCCAACTTTGCCAGTTTTCTGTCCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAATTTTATTTTTTCTTCCAACTTTGCCAGTTTTCTGTCCCCAG  200

seq1  ACAGGAATATAAATGGTTGTATTATCCCTTCTTCAGTTTCCCCTTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATATAAATGGTTGTATTATCCCTTCTTCAGTTTCCCCTTTTAGT  250

seq1  TATTTTATAAATATATTTCACTGAAACACCAAACTCTTGGCCTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAAATATATTTCACTGAAACACCAAACTCTTGGCCTATTTTTT  300

seq1  GTTCATTAGTAAATCCAGGTTTTCTAGTTTTTGTTAAGTTTTGGATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAGTAAATCCAGGTTTTCTAGTTTTTGTTAAGTTTTGGATAGGG  350

seq1  TAGGTCTATTGAGAGGACGGTGAGATGGACTAACAGGGAATACAGAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTATTGAGAGGACGGTGAGATGGACTAACAGGGAATACAGAATTT  400

seq1  ATTAGAAGAGTTATTAATGCTGTGGACAGAGAGCAGAGGGTCAACAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAGAGTTATTAATGCTGTGGACAGAGAGCAGAGGGTCAACAATAT  450

seq1  GGTGAGGGCTCATGGGAGAGTGTAGGTCCCAGAAGCACTGAAAGACGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCTCATGGGAGAGTGTAGGTCCCAGAAGCACTGAAAGACGTCA  500

seq1  TGGCCAGTTCCTTGATAAGAATAAGAATACACATTAGTGTACGTCTACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGTTCCTTGATAAGAATAAGAATACACATTAGTGTACGTCTACTT  550

seq1  ATACCTTAGATGGGGAGATTTTTAGTAAAGGACCCCAGACTGGTTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAGATGGGGAGATTTTTAGTAAAGGACCCCAGACTGGTTTTCTG  600

seq1  GTTATCACATAGGCAGCATGGAAGAGCATGGAAAACAGGAACAGTTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACATAGGCAGCATGGAAGAGCATGGAAAACAGGAACAGTTGGTA  650

seq1  CTGAGAATTAGCATCAGCATCTTTGGTGTTAATTCAATTATTAGGTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAATTAGCATCAGCATCTTTGGTGTTAATTCAATTATTAGGTTAGG  700

seq1  AAGCCTGTCTAGAGTGTCCCTGTAGATACTGTTCATTCTCTGTGAGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGTCTAGAGTGTCCCTGTAGATACTGTTCATTCTCTGTGAGAAGC  750

seq1  CCCAGCTATTTCCAAGTAGGCCAGATTCAAACACGTTCCTCCAGCCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTATTTCCAAGTAGGCCAGATTCAAACACGTTCCTCCAGCCTCCT  800

seq1  ATTTGCCAATCTGAACACTTAGTTCTCACAATATCAGCTATGATATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAATCTGAACACTTAGTTCTCACAATATCAGCTATGATATTCCT  850

seq1  GTAAAGGAGCTGGTCTACAATATGCCGAGGACTACTTCAGCTGATCAGAT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAAAGGAGCTGGTCTAC-ATATGCCGAGGACTACTTCAGCTGATCAGAT  899

seq1  GCTGGGAATCCTGCAGCTACTAGAGCACAGTGAACTCCCAAATCACA-TG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTGGGAATCCTGCAGCTACTAGAGCACAGTGAACTCCCAAATCACATTG  949

seq1  GAACCCTAAAGTAGGTATATCTGATAAAAATTGTCAGTCATCAAAGGGAG  999
      ||||||||||||| ||||||||||| |||||||||||||||| |||||||
seq2  GAACCCTAAAGTACGTATATCTGATGAAAATTGTCAGTCATC-AAGGGAG  998

seq1  GAGAGGCCCTTGGTCCTAT-AAAGATTCTA-TGCCCCATTATAGGCGACT  1047
      || ||||| ||||| |||| |||||||||| ||||| |||||| ||||||
seq2  GAAAGGCCTTTGGT-CTATAAAAGATTCTATTGCCCAATTATA-GCGACT  1046

seq1  GCCAGGGCCAGGAAGCAGGAATGGGTGGGTT  1078
      |||||||||||| ||||| | ||||||||||
seq2  GCCAGGGCCAGG-AGCAGAATTGGGTGGGTT  1076