BAC Information

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BAC

Clone NameB6Ng01-133I09
ChromosomeY (Build37)8 (Build37)
Map Location 1,120,587 - 1,121,08133,764,134 - 33,765,317
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-133I09.bB6Ng01-133I09.g
ACCDH934046DH934047
length9031,160
definitionDH934046|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I09, 5' end.DH934047|Mus musculus domesticus DNA, BAC clone: B6Ng01-133I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,587 - 1,121,081)(33,764,134 - 33,765,317)
sequence
gaattcttttttttaatactttttattaggtattttcctcatttacattt
ccaatgctatcccaaaagtcccccataccctcccacccactcccctaccc
acccactcccactttttgaccctaacgttccccggtactggggcatataa
agtttgcaagtccaatgggcctctgtttccagtgatggccgactaggcca
tcttttgatacatatgcagctagagtcaagagctccagggtactggttag
ttcataatgttgttctacctatagggttgcagatccctttagctccttgg
gtactttctctagctcctccattgggggccctgtgatccatccaatagct
gactgtgagcatccacttatgtgtttgctaggccccggcctagtctcaca
agagacagctatatcagggtcctttcagcaaaatcttgctagtatatgca
atggtgtcagtgtttggaagctgattatgggatggaaccctggatatggc
aggctctagatggtccatccttttgacatagctccaaactttgtctctgt
aactccttccatgggtgttttgttcccaattctaagaaggggcaaagtgt
ccacactttggtctttgttcttcttgagtttcatgtgtttagcaaattgt
atcttatatcttgggtatcctaagtttctgggctaatatccacttatcag
tgagaaaatattgtgtgagttccttttgtgatttggttacctcactcagg
atgataccctccaggtctatccatgcctaggaatttcataaattcattct
ttttaatagctgagtactactccattgtgtaaataccacattttttgtat
ccattcctctgttgagaggcatctgggttctttccagcttctggctatat
aaa
gaattccagccgggcgtagtggagcacgcctttaatcccagcactcgggc
agcagaggcaggaggatttctgagttcgaggccggcttggtctacaaagt
gagtgccaggacagccagggctacacagagaaaccatgtctagaaaaacc
aaaacaaacaaacaaacaaacaaacaaacaaaaacaaaagtgaatcccat
gagtatgtctctaactcagtcttgaaatgtactaagttcccatggaaaaa
atgtcaacagaagttgttttggaaataggtaaccttgacccagattttat
aaggagaattaaagacccaagcacagtggaactgtttgtaaagaaaacag
aatgatagtagaataatcctaaaataactcaaaatatacttccatatgaa
tttattgaaacaagtagtactatcaataacagacagattagggtggaaaa
tctacaaggttagatagggaaaaaaacaatgaaaaattaaagtactgcat
gtggtaaagataaagttccaaaataagtatagaaaagcaattattttata
aatgatattgtcacagctactatttttaggacaaatttcagctcaattaa
aacaattattttacattctgagatgcagaaatcgtttttactttattact
gaacactagaacctatgaaagaaaaagaattggtacaactctatgcatca
gagtaattgcttctctgtttcacgtagcgctaaatggagagtgaaaagac
agacagtacaaagaaaatgcctgccttctctctggaatgtacatgttggg
tttcaccttacacattagagaccctataaaagccacaactaataaaaaaa
caacaatgtatgcaaatgtacttcactaaaattaaagcacaaatggtatc
tccacacgtcacgcaccctgagcacattactaggttgaaatagggaagtt
taagttacgtgaagatttttcactataaaatgataaggatctatcaatcc
gatcacacatttataggtacaatatagagagtcagattgctatctgtaca
aattatgtagcctctatggacaatagtttacatatcatcagtgaaaatgc
acctgcatcattatcaaggtgcttcatttagagaatgtcgtattattatt
agattacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120587_1121081
seq2: B6Ng01-133I09.b_53_546

seq1  -TTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCCAATG  49
       |||||||   | ||||||||||||||||  |||||||||||||||||||
seq2  TTTTTTTTAATACTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATG  50

seq1  CTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCC  99
      |||| |||||||||||||||| || ||||  ||||||||||| |||||||
seq2  CTATCCCAAAAGTCCCCCATACCCTCCCA--CCCACTCCCCTACCCACCC  98

seq1  ACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAAAGTT  149
      |||||| ||||||| ||||    |||||| ||||||||||||||||||||
seq2  ACTCCCACTTTTTGACCCTAACGTTCCCCGGTACTGGGGCATATAAAGTT  148

seq1  TGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTT  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGCAAGTCCAATGGGCCTCTGTTTCCAGTGATGGCCGACTAGGCCATCTT  198

seq1  TTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGCTCA  249
      |||||| ||||||||||||||||||||||||| ||||||||||||| |||
seq2  TTGATACATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTTCA  248

seq1  TAACGTTGTTCCACCTATAGGGTTGGAGATCCCTTTAGCTCCTTGGCTAC  299
      ||| ||||||| ||||||||||||| |||||||||||||||||||| |||
seq2  TAATGTTGTTCTACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  298

seq1  TTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGACT  349
      |||||||||||||||||||||| ||||| ||||||||||| |||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACT  348

seq1  GTGAGCATCCACTTCTGTGTTTGCTGGGCCCCGGCATAGTCTCACAAGAG  399
      |||||||||||||| |||||||||| ||||||||| ||||||||||||||
seq2  GTGAGCATCCACTTATGTGTTTGCTAGGCCCCGGCCTAGTCTCACAAGAG  398

seq1  ACAGCTACATCTGCCTCCTTTCAATAAAATCTTGCTAGTGTATGCAATGG  449
      ||||||| ||| |  ||||||||  |||||||||||||| ||||||||||
seq2  ACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTATATGCAATGG  448

seq1  TGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCCTGGCTATGGC  495
      |||||| ||||||| |||||||||||| |||| |||||| ||||||
seq2  TGTCAGTGTTTGGAAGCTGATTATGGGATGGAACCCTGGATATGGC  494

seq1: chr8_33764134_33765317
seq2: B6Ng01-133I09.g_69_1228

seq1  GAATTCCAGCCGGGCGTAGTGGAGCACGCCTTTAATCCCAGCACTCGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCGGGCGTAGTGGAGCACGCCTTTAATCCCAGCACTCGGGC  50

seq1  AGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCGGCTTGGTCTACAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAGGAGGATTTCTGAGTTCGAGGCCGGCTTGGTCTACAAAGT  100

seq1  GAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCATGTCTAGAAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCAGGACAGCCAGGGCTACACAGAGAAACCATGTCTAGAAAAACC  150

seq1  AAAACAAACAAACAAACAAACAAACAAACAAAAACAAAAGTGAATCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAAACAAACAAAAACAAAAGTGAATCCCAT  200

seq1  GAGTATGTCTCTAACTCAGTCTTGAAATGTACTAAGTTCCCATGGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTCTCTAACTCAGTCTTGAAATGTACTAAGTTCCCATGGAAAAA  250

seq1  ATGTCAACAGAAGTTGTTTTGGAAATAGGTAACCTTGACCCAGATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAGAAGTTGTTTTGGAAATAGGTAACCTTGACCCAGATTTTAT  300

seq1  AAGGAGAATTAAAGACCCAAGCACAGTGGAACTGTTTGTAAAGAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAATTAAAGACCCAAGCACAGTGGAACTGTTTGTAAAGAAAACAG  350

seq1  AATGATAGTAGAATAATCCTAAAATAACTCAAAATATACTTCCATATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGTAGAATAATCCTAAAATAACTCAAAATATACTTCCATATGAA  400

seq1  TTTATTGAAACAAGTAGTACTATCAATAACAGACAGATTAGGGTGGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAACAAGTAGTACTATCAATAACAGACAGATTAGGGTGGAAAA  450

seq1  TCTACAAGGTTAGATAGGGAAAAAAACAATGAAAAATTAAAGTACTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGGTTAGATAGGGAAAAAAACAATGAAAAATTAAAGTACTGCAT  500

seq1  GTGGTAAAGATAAAGTTCCAAAATAAGTATAGAAAAGCAATTATTTTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAAGATAAAGTTCCAAAATAAGTATAGAAAAGCAATTATTTTATA  550

seq1  AATGATATTGTCACAGCTACTATTTTTAGGACAAATTTCAGCTCAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTGTCACAGCTACTATTTTTAGGACAAATTTCAGCTCAATTAA  600

seq1  AACAATTATTTTACATTCTGAGATGCAGAAATCGTTTTTACTTTATTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATTTTACATTCTGAGATGCAGAAATCGTTTTTACTTTATTACT  650

seq1  GAACACTAGAACCTATGAAAGAAAAAGAATTGGTACAACTCTATGCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTAGAACCTATGAAAGAAAAAGAATTGGTACAACTCTATGCATCA  700

seq1  GAGTAATTGCTTCTCTGTTTCACGTAGCGCTAAATGGAGAGTGAAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATTGCTTCTCTGTTTCACGTAGCGCTAAATGGAGAGTGAAAAGAC  750

seq1  AGACAGTACAAAGAAAATGCCTGCCTTCTCTCTGGAATGTACATGTTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTACAAAGAAAATGCCTGCCTTCTCTCTGGAATGTACATGTTGGG  800

seq1  TTTCACCTTACACATTAGAGACCCTATAAAAGCCACAACTAATAAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCACCTTACACATTAGAGACCCTATAAAAGCCACAACTAAT-AAAAAA  849

seq1  ACAACAATGTATGCAAATGTACTTCACTAAAATTAAAGCACAAATGGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATGTATGCAAATGTACTTCACTAAAATTAAAGCACAAATGGTAT  899

seq1  CTCCACACGTCACGCACCCTGAGCACATTACTAGGTTGAAATAGGGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACACGTCACGCACCCTGAGCACATTACTAGGTTGAAATAGGGAAGT  949

seq1  TTAAGTTACGTTGAAGATTTTTTTCAACTATAAAAATGATAAGGATCTAT  1000
      |||||||||| |||||||||||    ||||| ||||||||||||||||||
seq2  TTAAGTTACG-TGAAGATTTTT---CACTAT-AAAATGATAAGGATCTAT  994

seq1  CAATCCGATCACACATTTAATAGGTACAATATAGAGAGTCCAGATTGCTA  1050
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  CAATCCGATCACACATTT-ATAGGTACAATATAGAGAGT-CAGATTGCTA  1042

seq1  TCTGTACAAAATAATGTAGCCTCTATGGACAATAGTTTACAATATCATCA  1100
      ||||||| |||| ||||||||||||||||||||||||||| |||||||| 
seq2  TCTGTAC-AAATTATGTAGCCTCTATGGACAATAGTTTAC-ATATCATC-  1089

seq1  AAGTGAAAAATGCACCTGCATCATTTAATCAAAGTGCTTTCATTTCTAGA  1150
       |||| |||||||||||||||||||  ||||| |||| ||||||  ||||
seq2  -AGTG-AAAATGCACCTGCATCATT--ATCAAGGTGC-TTCATT--TAGA  1132

seq1  GATTGTCCTGTAATGTATTTATTAGAAATACACT  1184
      || |||| | | |     ||||||| | ||||||
seq2  GAATGTCGTATTA-----TTATTAG-ATTACACT  1160